BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG03RM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1100 1586 0.0
>3x_Contig1100
Length = 4703
Score = 1586 bits (800), Expect = 0.0
Identities = 836/846 (98%), Gaps = 2/846 (0%)
Strand = Plus / Minus
Query: 52 attgatggtttgtatttggccggtcaaataaatggtactactggttatgaagaagcctgc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2970 attgatggtttgtatttggccggtcaaataaatggtactactggttatgaagaagcctgc 2911
Query: 112 gcgcaaggggtggtcgcaggcattaatgctggcttatcagcaagaggacgtcctccgtta 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2910 gcgcaaggggtggtcgcaggcattaatgctggcttatcagcaagaggacgtcctccgtta 2851
Query: 172 attctttcaagatctgactcctatacaggggtgcttattgatgacttaatcacgaaggga 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2850 attctttcaagatctgactcctatacaggggtgcttattgatgacttaatcacgaaggga 2791
Query: 232 gtagaagaaccttatcgtatgtttacatcaaggtccgaatttcgagttacggtcagagcg 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2790 gtagaagaaccttatcgtatgtttacatcaaggtccgaatttcgagttacggtcagagcg 2731
Query: 292 gataatgcagattttaggttaacagaaaaggggaaaaagctaggtgttgtcagtgaagag 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 gataatgcagattttaggttaacagaaaaggggaaaaagctaggtgttgtcagtgaagag 2671
Query: 352 cgttggcaacgctttttattggacaaaaccatatacagagaattggagaacactctgaaa 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 cgttggcaacgctttttattggacaaaaccatatacagagaattggagaacactctgaaa 2611
Query: 412 tcttacgtcctatccaaccataaatgggaccagctactcgatgtcgctgtaggatcaacg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 tcttacgtcctatccaaccataaatgggaccagctactcgatgtcgctgtaggatcaacg 2551
Query: 472 cacaaaagccaaaatgcatgggatatgtttaaatttaatggtgtcacgctagattcatta 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 cacaaaagccaaaatgcatgggatatgtttaaatttaatggtgtcacgctagattcatta 2491
Query: 532 atcaaagctatcccagatttatctatcgattccagtgaaattccagttcacattttactg 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 atcaaagctatcccagatttatctatcgattccagtgaaattccagttcacattttactg 2431
Query: 592 aaaatcaatgtcgaagctaaatatgctccgtatctaaaaagacaaaaccaattcattaag 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 aaaatcaatgtcgaagctaaatatgctccgtatctaaaaagacaaaaccaattcattaag 2371
Query: 652 gcattccaggcggatgaaaatatgttgctccctttgaattatgactacacaaagattcca 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 gcattccaggcggatgaaaatatgttgctccctttgaattatgactacacaaagattcca 2311
Query: 712 tccattagctctgagtgtaaaacgattttgaatactgttcaacctgctactatagggcag 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 tccattagctctgagtgtaaaacgattttgaatactgttcaacctgctactatagggcag 2251
Query: 772 gcaaggagaattc-agggatgacgccagcatcaatttncgaacttttataacttgtcaag 830
||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct: 2250 gcaaggagaattcaagggatgacgccagcatcaattttcgaactttataaacttgtcagg 2191
Query: 831 tctcaacaatctgtnatc-aaaatgatcggatacagcaaagctaagaactgaaaatcatg 889
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 2190 tctcaacaatctgtaatcaaaaatgatcggatacagcaaagctaaagactgaaaatcatg 2131
Query: 890 tatata 895
||||||
Sbjct: 2130 tatata 2125
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5509
Number of Sequences: 1807
Number of extensions: 5509
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)