BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG04FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 1518 0.0
>3x_Contig1620
Length = 12263
Score = 1518 bits (766), Expect = 0.0
Identities = 815/822 (99%), Gaps = 7/822 (0%)
Strand = Plus / Plus
Query: 88 ttgcaaaccaattgataacgttctattggttctatccaaacccgaagtagccaaaacaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5665 ttgcaaaccaattgataacgttctattggttctatccaaacccgaagtagccaaaacaac 5724
Query: 148 acagctgtccttagcagcgaattgcaaatcgccagagactaaatcaaaaatagattgacc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5725 acagctgtccttagcagcgaattgcaaatcgccagagactaaatcaaaaatagattgacc 5784
Query: 208 aacctggaattttaaaatatgaatatttttgttgcttgtgtctttatatgctgtgaatgg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5785 aacctggaattttaaaatatgaatatttttgttgcttgtgtctttatatgctgtgaatgg 5844
Query: 268 tgtagtcaaaagatgggagaagttatcaacagtgaaatagaccggatgatcagtttggtt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845 tgtagtcaaaagatgggagaagttatcaacagtgaaatagaccggatgatcagtttggtt 5904
Query: 328 agttaattctttaatgaatgcatcgaaaacggctccacggtgacgagatggtgccttgac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905 agttaattctttaatgaatgcatcgaaaacggctccacggtgacgagatggtgccttgac 5964
Query: 388 acttagtaaatcgtataacgtggatttacctgcagataaattcacatttctcttcacaga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5965 acttagtaaatcgtataacgtggatttacctgcagataaattcacatttctcttcacaga 6024
Query: 448 taggtctttacccccagagtgaactaatttatagtctttggagagtttaatggattgcaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6025 taggtctttacccccagagtgaactaatttatagtctttggagagtttaatggattgcaa 6084
Query: 508 taattcttttttgttggatttgacaaatttggttaataagttcttgatgtacattggttg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6085 taattcttttttgttggatttgacaaatttggttaataagttcttgatgtacattggttg 6144
Query: 568 aatgtatctgtcttcatccaagaagaagtcatttctaccatttgtaagaagttcggagtt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6145 aatgtatctgtcttcatccaagaagaagtcatttctaccatttgtaagaagttcggagtt 6204
Query: 628 ggaaacagttaacacaagtcccttgttttctagtgcgtgagcatgtagctgggccagtag 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6205 ggaaacagttaacacaagtcccttgttttctagtgcgtgagcatgtagctgggccagtag 6264
Query: 688 agtagacttacccacacctggttcacctgttagaacaagctttttgttttctgacttccg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6265 agtagacttacccacacctggttcacctgttagaacaagctttttgttttctgacttccg 6324
Query: 748 t-aggcttcgtacaa-tttctagtggtggaatctctaactagtgatattggacgtgtgaa 805
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6325 taaggcttcgtacaattttctagtggtggaatctctaactagtgatattggacgtgtgaa 6384
Query: 806 caattcattgaattga-tttgcttgaatgaacccagacgatacaagaaattgt-attgct 863
|||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 6385 caattcattgaattgattttgcttgaatgaacccagacgatacaag-aattgtaattgct 6443
Query: 864 gctctgag-aagaatggacatctgc-gcactgatgttattag 903
|||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 6444 gctctgagaaagaatggacatctgcggcactgatgttattag 6485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6815
Number of Sequences: 1807
Number of extensions: 6815
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)