BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG04RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1154 1158 0.0
>3x_Contig1154
Length = 6277
Score = 1158 bits (584), Expect = 0.0
Identities = 710/741 (95%), Gaps = 9/741 (1%)
Strand = Plus / Plus
Query: 34 aagcttttaaaaaatacatccgcagactcattagctatcatgacatacagaaataaaacg 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 aagcttttaaaaaatacatccgcagactcattagctatcatgacatacagaaataaaacg 4120
Query: 94 tatgttatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 tatgttatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaa 4180
Query: 154 ccatttaacgccaaacggattccattattatctgagctactttgaaaatcactatagaat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 ccatttaacgccaaacggattccattattatctgagctactttgaaaatcactatagaat 4240
Query: 214 tatttacattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaat 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tatttacattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaat 4300
Query: 274 tcatccaatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgata 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 tcatccaatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgata 4360
Query: 334 ttttgatttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaata 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4361 ttttgatttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaata 4420
Query: 394 tatgcctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatg 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4421 tatgcctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatg 4480
Query: 454 aaccgacatagctcatcaaatggttgaaaagctttcaaagaacgaatcttcaaatcaata 513
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4481 aaccgacatagctcatcaaatggttgaaaagctttcaaagaacgaatctccaaatcaata 4540
Query: 514 tttgagggagtcatctggactaattcgtcaaggaatgctnngatatcgtttttctgcgaa 573
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4541 tttgagggagtcatctggactaattcgtcaaggaatgctgaataatcgtttttctgcgaa 4600
Query: 574 ccttctct-agtagctt-gtgaaatcagattcg-actgagcacaaag-tttnctgaaggt 629
|||||||| |||||||| ||||||||||||||| ||||||||| ||| ||| ||||||||
Sbjct: 4601 ccttctctaagtagcttagtgaaatcagattcgaactgagcaccaagttttcctgaaggt 4660
Query: 630 ttg-atttaatcagttcactagcagcattaactttggcagcatttcgctcctgttggtat 688
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 4661 ttgaatttattcagttcactagcagcattagctttggcagcatttcgctcctgtt-gtag 4719
Query: 689 ttta-aagaattcaaacttaaattcttaacgcctttcctgg-tgaaaccctattgccaac 746
|||| | |||| |||||| ||||||| | |||||| ||||| |||| || || ||| ||
Sbjct: 4720 tttagaggaatccaaactcaaattctcagcgccttccctggctgaagcctcatcgcccac 4779
Query: 747 ctta-cttttgcaagttgtaa 766
|||| ||||||||||||||||
Sbjct: 4780 cttatcttttgcaagttgtaa 4800
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8980
Number of Sequences: 1807
Number of extensions: 8980
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)