BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG05FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1035 1431 0.0
>3x_Contig1035
Length = 4175
Score = 1431 bits (722), Expect = 0.0
Identities = 816/840 (97%), Gaps = 7/840 (0%)
Strand = Plus / Plus
Query: 86 atgattctttgcctacgtcgatcttaaagatcgatttctttaagtacctcatcttgctgg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3279 atgattctttgcctacgtcgatcttaaagatcgatttctttaagtacctcatcttgctgg 3338
Query: 146 cgcgtggtggtgtctgggcagatgtcgacactgatctgttgcaaccagtacccaattgga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3339 cgcgtggtggtgtctgggcagatgtcgacactgatctgttgcaaccagtacccaattgga 3398
Query: 206 tcccagagaacttttctccaaaggaaatcgggttgattattggtattgaacacgactcga 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3399 tcccagagaacgtgtctccaaaggaaatcgggttgattattggtattgaacacgactcga 3458
Query: 266 agactcctgattggagatcttcttatttgagaagattgcaatttggcaattgggtcgtac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3459 agactcctgattggagatcttcttatttgagaagattgcaatttggcaattgggtcgtac 3518
Query: 326 aagccaagccaggccatccagtgatccgtgaaatggtcgcaagggtcactgagactacat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3519 aagccaagccaggccatccagtgatccgtgaaatggtcgcaagggtcactgagactacat 3578
Query: 386 tggaaaaaaaatacgctgatgaacttaacatgaacctaagaaacgatctgaccattatgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3579 tggaaaaaaaatacgctgatgaacttaacatgaacctaagaaacgatctgaccattatgg 3638
Query: 446 gctggaccggaactggtgcttggaccgacgtaatattcacctatttcaacgattacgttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3639 gctggaccggaactggtgcttggaccgacgtaatattcacctatttcaacgattacgttc 3698
Query: 506 aaagtggtgttttagacaagatcacttggaaacatttccataacttaaaggtacccaaac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3699 aaagtggtgttttagacaagatcacttggaaacatttccataacttaaaggtacccaaac 3758
Query: 566 tggtcggagacattctagtgttcccagaagttagtttcaatgcgccacaagctgattcag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3759 tggtcggagacattctagtgttcccagaagttagtttcaatgcgccacaagctgattcag 3818
Query: 626 acacggattctaaacagttgactaacagtgcgctacatttcgcaacacataccaaaatga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3819 acacggattctaaacagttgactaacagtgcgctacatttcgcaacacataccaaaatga 3878
Query: 686 agtcatggaagaaccagcaaaaactccgcggctacaaataacgatttatatagtactata 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3879 agtcatggaagaaccagcaaaaactccgcggctacaaataacgatttatatagtactata 3938
Query: 746 ttcatatcacaacttttaataattttgttaatccgtttctgacactaaatcatgtaatag 805
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3939 ttcatatcacaactttaaataattttgttaatccgtttctgacactaaatcatgtataag 3998
Query: 806 ttgtggaaactaaaatca-aatgcgcccaaactttact-aaaactgggccattaaaagaa 863
|||||| ||||||||||| | ||||||||| || |||| |||||||||| |||||||||
Sbjct: 3999 ttgtgg-aactaaaatcagagtgcgcccaagctctactaaaaactgggcaattaaaagac 4057
Query: 864 cttcttgttcacttaaaacgaatttttgttgtnccttaatctggtttactcatcatctaa 923
||| | |||||| |||||||| | |||||| ||| |||||| |||||||||||||||
Sbjct: 4058 tttcctcgtcactt-aaacgaatatctgttgtccct--atctgg-ttactcatcatctaa 4113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5917
Number of Sequences: 1807
Number of extensions: 5917
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)