BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG05RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 1207 0.0
>3x_Contig1783
Length = 22123
Score = 1207 bits (609), Expect = 0.0
Identities = 664/679 (97%), Gaps = 3/679 (0%)
Strand = Plus / Plus
Query: 48 taaagttgatgacagggtatcagacttcattattcctatgatctatgggtatgctaaggt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16738 taaagttgatgacagggtatcagacttcattattcctatgatctatgggtatgctaaggt 16797
Query: 108 tgttgatactgttttccatgcgactccgatttcgattggattgatcacgagaaggagtat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16798 tgttgatactgttttccatgcgactccgatttcgattggattgatcacgagaaggagtat 16857
Query: 168 atttagggccggaactagatatttccgcagaggcattgacgaacacggtaatgttggtaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16858 atttagggccggaactagatatttccgcagaggcattgacgaacacggtaatgttggtaa 16917
Query: 228 cttcaacgagacagagcaggtgctgtgtgttcaaaagccaatgaaggatggctatcactt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16918 cttcaacgagacagagcaggtgctgtgtgttcaaaagccaatgaaggatggctatcactt 16977
Query: 288 cttctcttttttacaaacgaggggttccgtgccagtttattgggcagagttgaacaattt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16978 cttctcttttttacaaacgaggggttccgtgccagtttattgggcagagttgaacaattt 17037
Query: 348 aaagtacaagccgaacttgttgttggctgagaacagctcgttagatgcaaccaagaagca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17038 aaagtacaagccgaacttgttgttggctgagaacagctcgttagatgcaaccaagaagca 17097
Query: 408 tttcgatgaacaaactcggttgtacaatgaaaactatttggtgaatctagtcaatcaaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17098 tttcgatgaacaaactcggttgtacaatgaaaactatttggtgaatctagtcaatcaaaa 17157
Query: 468 gggacacgaattacctgtgaaggaagcttacgaacaggttgttactgccttaaatgaccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17158 gggacacgaattacctgtgaaggaagcttacgaacaggttgttactgccttaaatgaccc 17217
Query: 528 anagcttcactatatctacttcgatttccatcacgaatgtaagaatatgcaatggcacaa 587
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 17218 aaagcttcactatatctacttcgatttccatcacgaatgtaggaatatgcaatggcacaa 17277
Query: 588 ggtcaaattgttattggatcatttgcaatcaatgggcttgtccaat-aagatttcttnca 646
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 17278 ggtcaaattgttattggatcatttgcaatcaatgggcttgtccaataaagatttcttcca 17337
Query: 647 caagactttggatgctaatgggtgttacactggcagtttttttccagcaggcatcggggg 706
||||||||||||||||||| |||||||||||| |||||| | | ||||| ||| || |
Sbjct: 17338 caagactttggatgctaat-ggtgttacactgcaagttttctccaagcagcaatc-ggtg 17395
Query: 707 gttagaactaactggatgg 725
|||||||||||||| ||||
Sbjct: 17396 gttagaactaactgtatgg 17414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6233
Number of Sequences: 1807
Number of extensions: 6233
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)