BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG06FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1502 1550 0.0
>3x_Contig1502
Length = 14970
Score = 1550 bits (782), Expect = 0.0
Identities = 874/895 (97%), Gaps = 9/895 (1%)
Strand = Plus / Plus
Query: 88 tggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatcctggagaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 tggtgtgaagaaactaattcctgttgctgtttctaaccttgatgatatatcctggagaac 9546
Query: 148 aaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccactcaactctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547 aaaaagaggttctgtggagcttttgggtaacatggcttatttggatcccactcaactctc 9606
Query: 208 tgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatacccacaagga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9607 tgcatctttgtctaccattgttcctgaaattgtaggtgttttgaatgatacccacaagga 9666
Query: 268 agtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattagaaaccctga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9667 agtcagaaaggccgctgacgagtctttgaatagatttggtgaagttattagaaaccctga 9726
Query: 328 aatccagaaattggttcctactttgattaatgctattggtgatccaacaaaatacacaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9727 aatccagaaattggttcctactttgattaatgctattggtgatccaacaaaatacacaga 9786
Query: 388 agatgcactagatgccttgattcaaacacagtttgttcattacatcgatggtccttcatt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9787 agatgcactagatgccttgattcaaacacagtttgttcattacatcgatggtccttcatt 9846
Query: 448 agcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaacactaagag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9847 agcgttgattatccacgttattcatcgaggtatgcgtgacagatctgcaaacactaagag 9906
Query: 508 gaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagagatttggttcc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9907 gaaggcttgtaaaattgtcggtaacatggctatccttgttgatactagagatttggttcc 9966
Query: 568 ttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgtgcctaatac 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9967 ttacttacaacaactaattgatgaagtagaaattgctatggtagaccctgtgcctaatac 10026
Query: 628 aagagccacagccgcacgtgcattaggtgccttagtcgaaagattaggtgaagaacagtt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10027 aagagccacagccgcacgtgcattaggtgccttagtcgaaagattaggtgaagaacagtt 10086
Query: 688 cccagacttgattcctcgtttgatgtccactttaagcgataatactaaatcaggggatcg 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10087 cccagacttgattcctcgtttgatgtccactttaagcgataatactaaatcaggggatcg 10146
Query: 748 tatgggctcagcacaagcattggcagaagttatctctggattaggtctttccaagttgg- 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10147 tatgggctcagcacaagcattggcagaagttatctctggattaggtctttccaagttgga 10206
Query: 807 agagttgttaccaactatccctctca-gtgtcacaaattatcgtgcttatgtncgtgaaa 865
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 10207 agagttgttaccaactat-cctctcaggtgtcacaaattatcgtgcttatgttcgtgaag 10265
Query: 866 gtttcatgcctcctaatgcttt--ctaactgtttggcttc-gtcaacattttgctccgtt 922
|| |||||||| |||||||||| || |||||| ||||| ||||||| ||||||||||
Sbjct: 10266 gtgtcatgcct-ctaatgcttttcttacctgttt-gcttcggtcaacaatttgctccgta 10323
Query: 923 cataaac-aaatcattcagccaatttttcttggattggctgatccanatgaaaat 976
||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct: 10324 cataaacaaaatcattcagccaattttatctggattggctgagccagatgaaaat 10378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6258
Number of Sequences: 1807
Number of extensions: 6258
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)