BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG06RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig917 1388 0.0
>3x_Contig917
Length = 3433
Score = 1388 bits (700), Expect = 0.0
Identities = 785/811 (96%), Gaps = 2/811 (0%)
Strand = Plus / Minus
Query: 49 ggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtgatatt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 ggacgttacctcatccagacagaagagagaaaggcattagcacggtctcttggtgatatt 1842
Query: 109 ttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatgaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 ttcagaaaaaaaatccgccgctagaatatactgcctactagatcgagcatgagaaatgaa 1782
Query: 169 acacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 acacatttagaagaagaagaacaagaaaaggaagtaaattaaattctagatggacgacgg 1722
Query: 229 gttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagtacggg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 gttcgaatggaccggacagtgggtaagtatgtcaggcagcgtggcagcagtcagtacggg 1662
Query: 289 ataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataataac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ataaattatgataccgaagaatgtactgtgtagtaacaactgggcaggaggaataataac 1602
Query: 349 aagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcccagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 aagggaaaaaaattaggaaaacagagaaagaaaatccgctggctggcttacatgcccagg 1542
Query: 409 atgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggccaatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 atgaaggttggcctgctgtaatattactttagtttatgtcacgttacgccatggccaatt 1482
Query: 469 gacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtctttcatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 gacctgcgacaatgtcaatacagataaggagtgtttacccttaacgtgaagtctttcatg 1422
Query: 529 tgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagtgaag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 tgcctgttcttttcacagtaatcaaaagactgagatgtcttgatttagatagcagtgaag 1362
Query: 589 agcggatcgacatagcgcattagatagcatttgggagatcagttgaagttgcaatcgatc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 agcggatcgacatagcgcattagatagcatttgggagatcagttgaagttgcaatcgatc 1302
Query: 649 agatagaaatccagttttcctttaatcccacagtcatttccaaccctagatttttcagta 708
||||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||
Sbjct: 1301 agatagaaatccagtttcctttaaatcccacagtcaattccaaccctagatttttcagta 1242
Query: 709 gtgcagagtcatctaatgaaaccctnctttctttctttctttctacggttccgctttctt 768
||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| | |
Sbjct: 1241 gtgcagagtcatctaatgaaacctttctttctttctttctttctacgtttccgcttccat 1182
Query: 769 tcgtagcttaccctgggatctcattaatccctccaaattt-aattttgcttgtaaggaac 827
|||||||| | ||| |||||||||| | |||||| |||| |||| |||| ||||| ||
Sbjct: 1181 tcgtagctca-ccttggatctcattcaatcctccagatttcaattctgctagtaagtaaa 1123
Query: 828 ccgagaaatttttttaaacggtccaagtact 858
| ||||| | ||||||||||| ||||||||
Sbjct: 1122 cagagaagtaattttaaacggtacaagtact 1092
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8075
Number of Sequences: 1807
Number of extensions: 8075
Number of successful extensions: 205
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)