BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG07RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 1431 0.0
>3x_Contig1281
Length = 7825
Score = 1431 bits (722), Expect = 0.0
Identities = 755/761 (99%), Gaps = 4/761 (0%)
Strand = Plus / Plus
Query: 51 taatttaacacatgtggttttgaaaacaattgataaatttgatgagaacagctcgttgac 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 taatttaacacatgtggttttgaaaacaattgataaatttgatgagaacagctcgttgac 1538
Query: 111 tgtggagtcaaaaaggaagcgtaaggtgaaccttaatcacacagcaattgaaaagtatgc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 tgtggagtcaaaaaggaagcgtaaggtgaaccttaatcacacagcaattgaaaagtatgc 1598
Query: 171 aaaagataatgatttagactatgaatcagcctttgatatattagaagaacaatttaaaca 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 aaaagataatgatttagactatgaatcagcctttgatatattagaagaacaatttaaaca 1658
Query: 231 agtgaccataaactttgataaggtttttcgcggatatctgacagaaccaacgatatcaac 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 agtgaccataaactttgataaggtttttcgcggatatctgacagaaccaacgatatcaac 1718
Query: 291 ttacatcagatatctacagtcttacaaagaactggaggacaaagacctcataagggttct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 ttacatcagatatctacagtcttacaaagaactggaggacaaagacctcataagggttct 1778
Query: 351 aaaattctttcagagagtgtttgtcaaagcgaaggaagaattatttctatttcgaattga 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 aaaattctttcagagagtgtttgtcaaagcgaaggaagaattatttctatttcgaattga 1838
Query: 411 cttcatgatattatgtcgagaaattctaagtcaacaaggtctgcctacaacttctgagct 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 cttcatgatattatgtcgagaaattctaagtcaacaaggtctgcctacaacttctgagct 1898
Query: 471 aagaactcatttcacaaaattcaatgagtactaccttaagcagctcaaaaataaactgaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 aagaactcatttcacaaaattcaatgagtactaccttaagcagctcaaaaataaactgaa 1958
Query: 531 gaaaatgccttctttgtacatcaatatattgttcccaatgctccatgactcccaaatatc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 gaaaatgccttctttgtacatcaatatattgttcccaatgctccatgactcccaaatatc 2018
Query: 591 atactatatgagacatggaaagatgaagttgactgaaggtactcctgacatagtattgcc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2019 atactatatgagacatggaaagatgaagttgactgaaggtactcctgacatagtattgcc 2078
Query: 651 cagcacatttatcaatattccagatgaaggctctcttcctaaaaaag-tttgntagatat 709
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 2079 cagcacatttatcaatattccagatgaaggctctcttcctaaaaaagttttgttagatat 2138
Query: 710 gcaagttggaatcttggtttctagtcttatcgatgatggatatgaagaattgattgaagc 769
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2139 gcaagttggaatcttggtttctagtcttatcgatgatggatatgaagatttgattgaagc 2198
Query: 770 tttg-tgcttaa-ttacagtcaag-ttcgatggattgaagg 807
|||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 2199 tttgttgcttaatttacagtcaagtttcgatggattgaagg 2239
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7324
Number of Sequences: 1807
Number of extensions: 7324
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)