BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG08RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1267 0.0
>3x_Contig1542
Length = 13810
Score = 1267 bits (639), Expect = 0.0
Identities = 740/762 (97%), Gaps = 11/762 (1%)
Strand = Plus / Minus
Query: 49 ctggctttgatgaatccctttattcacgtgacctgttgttttgacaattgtcttgacgca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12261 ctggctttgatgaatccctttattcacgtgacctgttgttttgacaattgtcttgacgca 12202
Query: 109 acaaatagaacagatcaatctttctataattctaagccatatttaagtatctgcaaagaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12201 acaaatagaacagatcaatctttctataattctaagccatatttaagtatctgcaaagaa 12142
Query: 169 aaggaatgattaacgcaacaacaaatggtaagatatcaaactagaaggaaatcctaagtt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12141 aaggaatgattaacgcaacaacaaatggtaagatatcaaactagaaggaaatcctaagtt 12082
Query: 229 ccattttctagtgaatcgtaataatggataatcatgggctactaatgaagttttctagga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12081 ccattttctagtgaatcgtaataatggataatcatgggctactaatgaagttttctagga 12022
Query: 289 ttcgaaagaagcctcagcagcccctaaattcgttggcagaactatactcacgcatagcga 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12021 ttcgaaagaagcctcagcagcccctaaattcgttggcagaactatactcacgcatagcga 11962
Query: 349 atgaaacaatacattatttaggtttagaacaaagacatgagtacaaggcagcaattcaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11961 atgaaacaatacattatttaggtttagaacaaagacatgagtacaaggcagcaattcaag 11902
Query: 409 gatggaaactaatggctactgatgcaatgtataagctgaataatattgaccgtcaatatc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11901 gatggaaactaatggctactgatgcaatgtataagctgaataatattgaccgtcaatatc 11842
Query: 469 ctaacttcgcttcatataccgaggaggaattgaatcttcagacaggaatacgtgagttgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11841 ctaacttcgcttcatataccgaggaggaattgaatcttcagacaggaatacgtgagttgt 11782
Query: 529 gcgataaagcaatgaanaatgtggaaagagtgcagttgntatgtgaagatgtaccg-aac 587
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 11781 gcgataaagcaatgaaaaatgtggaaagagtgcagttgttatgtgaagatgtaccgaaac 11722
Query: 588 ctgataataacagcg--aaaaca-tttctattggaantggt-gtaaatttaa-gtccata 642
||||||||||||||| |||||| |||||||||||| |||| |||||||||| |||||||
Sbjct: 11721 ctgataataacagcggaaaaacattttctattggaaatggtggtaaatttaaggtccata 11662
Query: 643 cg-taagagatgggatgtacaagatgcgatatanc-agagtggcagtggtttgggattaa 700
|| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 11661 cgttaagagatgggatgtacaagatgcgatataacaagagtggcagtggtttgggattaa 11602
Query: 701 aaaacgacaagaatgtaccaacggcgaaccctggaaa-ttttctgcatccaaat-tttac 758
|||||||||||||||||| |||||||||||||| ||| |||||||||||||||| | |||
Sbjct: 11601 aaaacgacaagaatgtacaaacggcgaaccctgtaaatttttctgcatccaaatctctac 11542
Query: 759 cagcagtaattcttca-gatccttttgaaaaccttgataatg 799
|||||||||||| ||| ||||| |||||| || |||||||||
Sbjct: 11541 cagcagtaattcctcaggatccctttgaagactttgataatg 11500
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6980
Number of Sequences: 1807
Number of extensions: 6980
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)