BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG09FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 1516 0.0
>3x_Contig1683
Length = 16378
Score = 1516 bits (765), Expect = 0.0
Identities = 818/832 (98%), Gaps = 3/832 (0%)
Strand = Plus / Plus
Query: 85 tattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgccagaattccaca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 tattggtcaattggcatcctgggtcggagcaatgtcctatttctgtgccagaattccaca 5748
Query: 145 attgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctctttataag 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5749 attgatcaagaattacaaaaggaagagtactgatgggctttcacccctcctctttataag 5808
Query: 205 tacgttaattgcatatgtcacatacacactatccattttcaccagttgctcttatctcac 264
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 tacgttaattgcaaatgtcacatacacactatccattttcaccagttgctcttatctcac 5868
Query: 265 agatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcgcagg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 agatgaggacaagctaggtttcgtactcaatgcattaccatttatcgtggggagcgcagg 5928
Query: 325 cactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaagacta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 cactgtagtgttcgatttgatctacttctaccaacactacgttttgtacgcggaagacta 5988
Query: 385 caacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacggtttc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 caacattagaagacttgaatctgacgagttcactccattgatgaatgacggaacggtttc 6048
Query: 445 ccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtgcaca 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6049 ccccctatcaaccaattcctattaacaatttctgtgttcttccccacaccaatgtgcaca 6108
Query: 505 tatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaacttcgaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6109 tatacgtatatattcacagaataattatatgtaatcatttctcgagcttgaaacttcgaa 6168
Query: 565 aacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatcatgt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6169 aacaccggcactactgaccggtttctcaatgccctgctttgaatatgggaccgatcatgt 6228
Query: 625 catttgtcatggagcacaccagtccgtggcacagcgtgactactccatgcccctggactg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6229 catttgtcatggagcacaccagtccgtggcacagcgtgactactccatgcccctggactg 6288
Query: 685 aaccactgccttttcaacaacggaataacaccgtgtaataagaaggcgaaaagtatcgta 744
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6289 aaccactgccttttcaacaacggaataacaccgtgtaataagagggcgaaaagtatcgta 6348
Query: 745 aaatatcgacaccgggacttacgttcaagaagcatcggat-aatgagggaaacaccgtta 803
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct: 6349 aaatatcgacaccgggacttacgttcaag-agcatcggataaatgagggaacaaccgtta 6407
Query: 804 ctcacataacatttattgttgctactgtgtcttcttctgggttgccctttttttctttta 863
||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 6408 ctcacataacaattattgttgctactgtgtcttcttctgtgttgccttttttttctttta 6467
Query: 864 ctcgttnctttacaaatcgtagcttgcaac-tagcaatatcagcactagcat 914
|||||| ||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 6468 ctcgtttcttagcaaatcgtagctcgcaacatagcaatatcagcactagcat 6519
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6144
Number of Sequences: 1807
Number of extensions: 6144
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)