BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG09RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig331 1497 0.0
>3x_Contig331
Length = 1863
Score = 1497 bits (755), Expect = 0.0
Identities = 831/850 (97%), Gaps = 5/850 (0%)
Strand = Plus / Plus
Query: 54 cttattaattagcggtggacaagatggatgcataaagatttgggatttgagatctcctaa 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cttattaattagcggtggacaagatggatgcataaagatttgggatttgagatctcctaa 865
Query: 114 aatctccaccactaggagtgatgtaagtatcaacaccgggtctgattccattagagacgt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aatctccaccactaggagtgatgtaagtatcaacaccgggtctgattccattagagacgt 925
Query: 174 aaaatggatgccttcttacgagttttctaatgataccaatggtctttcaaacagacattt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 aaaatggatgccttcttacgagttttctaatgataccaatggtctttcaaacagacattt 985
Query: 234 caaatttgccagtgtgcatgactctggattattattgaagtttgatttgagacaaccaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 caaatttgccagtgtgcatgactctggattattattgaagtttgatttgagacaaccaaa 1045
Query: 294 ccaagctgaaaaaaagattaatgcacattctggtcccgccttatgtttgaattggcatcc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1046 ccaagctgaaaaaaagattaatgcacattctggtcccgccttatgtttgaattggcatcc 1105
Query: 354 gcatcaggactacattattagtggtggaagagacggaaaatgttgcttgtggtatgtagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 gcatcaggactacattattagtggtggaagagacggaaaatgttgcttgtggtatgtagg 1165
Query: 414 cgacaaatctaatcaagttggtaacattagtagtaccaacctcaattcaagtaatccagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 cgacaaatctaatcaagttggtaacattagtagtaccaacctcaattcaagtaatccagc 1225
Query: 474 aacgcataatttatcatcatcataccccttggggctatccaacacccttgcatttcctga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 aacgcataatttatcatcatcataccccttggggctatccaacacccttgcatttcctga 1285
Query: 534 gctcacaataaataccgctcgttccatgaataaacttaagtttcgtccaaaatatgagac 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1286 gctcacaataaataccgctcgttccatgaataaacttaagtttcgtccaaaatatgagac 1345
Query: 594 gaatgtattcaattcattgattgggacttcatccatgggcgaagattcngatgtatctgt 653
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1346 gaatgtattcaattcattgattgggacttcatccatgggcgaagattcggatgtatctgt 1405
Query: 654 ttattcgctagcaagaaaa-atatttctaaaaacgttattgcttccagtgcaccttctgt 712
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1406 ttattcgctagcaagaaaatatattcctaaaaacgttattgcttccagtgcaccttctgt 1465
Query: 713 tggttttgtctggtgggatgacgacacgatattc-atttagacaagcaaattaccgttac 771
|||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||
Sbjct: 1466 tggttttgtctggtgggatgacgacacgatattcaatatagacaagcaaaataccgttac 1525
Query: 772 tgggtgggatttctctcatgaaccgactgtacttgataatttgccgaaaaac-caataaa 830
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1526 tgggtgggatatctctcatgaaccgactgtacttgataatttgccgaaaaacacaataaa 1585
Query: 831 ttgggaagtattggatggcgaatggttttctgtttttggacc-aaaacaaagtgggtatt 889
||| || |||||||||| ||||| ||||||||||||||| ||||| | |||||||||
Sbjct: 1586 atggagagatttggatggcg-atggtattctgtttttggaccaaaaaccaggtgggtatt 1644
Query: 890 tgtcttaaga 899
||||| ||||
Sbjct: 1645 tgtctcaaga 1654
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6768
Number of Sequences: 1807
Number of extensions: 6768
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)