BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG10FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1531 1289 0.0
>3x_Contig1531
Length = 8774
Score = 1289 bits (650), Expect = 0.0
Identities = 763/793 (96%), Gaps = 6/793 (0%)
Strand = Plus / Minus
Query: 85 ccaaatccaaatgcgcggttgggtcatccaacaacaaaagagttggcttaacgaacaaag 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3865 ccaaatccaaatgcgcggttgggtcatccaacaacaaaagagttggcttaacgaacaaag 3806
Query: 145 ccttagcaagagcgacacgcatcttccaaccaccagacatgtccttggtcttcttgttga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3805 ccttagcaagagcgacacgcatcttccaaccaccagacatgtccttggtcttcttgttga 3746
Query: 205 tagtcttagattttaaacccaaaccaatcaagataatagcagctctggattcgaaagtgg 264
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3745 tagtcttagagttgaaacccaaaccaatcaagataatagcagctctggattcgaaagtgg 3686
Query: 265 atggatccatatcgtccattctttcgtatagtggttccaatagatcagattcaggaccat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3685 atggatccatatcgtccattctttcgtatagtggttccaatagatcagattcaggaccat 3626
Query: 325 cttccaagagaatcttttctaccaaatcttccaatcttttcaattcaccttgagcttccc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3625 cttccaagagaatcttttctaccaaatcttccaatcttttcaattcaccttgagcttccc 3566
Query: 385 tgacgacgtattccaaagcggaatattcacttggctcagcaggttcgtccaacaaataaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3565 tgacgacgtattccaaagcggaatattcacttggctcagcaggttcgtccaacaaataaa 3506
Query: 445 tatcaatattttcaggaattgggtattctctgctggcaacagccttcaagaaagtggact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3505 tatcaatattttcaggaattgggtattctctgctggcaacagccttcaagaaagtggact 3446
Query: 505 taccacaaccgttttcacccaataaaccataacgacgaccataatttaattccaattggg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 taccacaaccgttttcacccaataaaccataacgacgaccataatttaattccaattggg 3386
Query: 565 aatcttggatcaaaactttaccgnggaaacaaca-ggaaacagaagatagcttaatatca 623
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct: 3385 aatcttggatcaaaactttaccgtggaa-caacaaggaaacagaagatagcttaatatca 3327
Query: 624 cgagaagtttccaatgaatctagaacaccggttacgacacggtcagatataccgtcttta 683
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3326 cgagaagtttccaatgaatctagaacaccggtaacgacacggtcagatataccgtcttta 3267
Query: 684 tcttgttgcaacttcaattgtgcaattttgtcagctgcagcgggcgcttcatcaactgtt 743
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3266 tcttgttgcaacttcaattgtgcaattttgtcagctgcagcggcggcttcatcaactgtt 3207
Query: 744 tcatcttccttcttggatcttttgtaagtctta-cagaagc-acccttttggggtttttt 801
||||||||||||||||||||| || ||||||| ||| ||| ||||| |||| || | ||
Sbjct: 3206 tcatcttccttcttggatcttctggtagtcttaccagcagcaaccctcttggcgtctctt 3147
Query: 802 tcgg-ttttttggcatttctttttgccttaaatgc-caaactgaaaccattttttttgga 859
|||| ||||||||||| ||| ||||||||| |||| | |||| | ||||||| |||| |
Sbjct: 3146 tcggcttttttggcatctctctttgccttagatgcagatactggagccattttctttgta 3087
Query: 860 ccttatattaacg 872
| |||||||||||
Sbjct: 3086 ctttatattaacg 3074
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7350
Number of Sequences: 1807
Number of extensions: 7350
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)