BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG10RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1187 0.0
3x_Contig990 327 2e-89
3x_Contig1793 297 2e-80
>3x_Contig1803
Length = 52241
Score = 1187 bits (599), Expect = 0.0
Identities = 659/672 (98%), Gaps = 6/672 (0%)
Strand = Plus / Minus
Query: 48 tactaatctagcaaaattaacttgaacgttcactaattctaggaatcgtcccaataagat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 tactaatctagcaaaattaacttgaacgttcactaattctaggaatcgtcccaataagat 1518
Query: 108 tgccttaagaactttgttctgatcgagtttcaaacttttactaacaaatcatatcttttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 tgccttaagaactttgttctgatcgagtttcaaacttttactaacaaatcatatcttttt 1458
Query: 168 gaaaacagtttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 gaaaacagtttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttcc 1398
Query: 228 gacaccattgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 gacaccattgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaa 1338
Query: 288 caaagattgatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 caaagattgatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaac 1278
Query: 348 atccaaaaggaatccactttgcacttggttttgagattgagaggtggtatcattgaacca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 atccaaaaggaatccactttgcacttggttttgagattgagaggtggtatcattgaacca 1218
Query: 408 tctttaaaggctttggcttctaagtacaactgtgaaaagtccgtttgcagatagtgttac 467
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1217 tctttaaaggctttggcttctaagtacaactgtgaaaagtccgtttgcagaaagtgttac 1158
Query: 468 gctagattgccaccaagagctactaactggtagaaagagaaagtgtggtcacaccaacca 527
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1157 gctagattgccaccaagagctactaact-gtagaaagagaaagtgtggtcacaccaacca 1099
Query: 528 attgcgtncaaagaagaag-taanatagtcgattctgct-ccactatggagtacatacat 585
||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 1098 attgcgtccaaagaagaagttaaaatagtcgattctgctaccactatggagtacatacat 1039
Query: 586 atttacgcacattcactatcatatgtgnntttttcatattagctttacagatctattatt 645
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1038 atttacgcacattcactatcatatgtg-ttttttcatattagctttacagatctattatt 980
Query: 646 ttgatttaaatataaatcttcttttacctttggttaatatcattggaacgttcctgagcg 705
||||||||||||||||||||| |||| | ||| ||||||||||| |||||||||||||||
Sbjct: 979 ttgatttaaatataaatcttc-tttaacattgtttaatatcatt-gaacgttcctgagcg 922
Query: 706 ttgctttgtgtg 717
||||||||||||
Sbjct: 921 ttgctttgtgtg 910
>3x_Contig990
Length = 3707
Score = 327 bits (165), Expect = 2e-89
Identities = 192/201 (95%)
Strand = Plus / Plus
Query: 195 ggtaagaccatcactttggaagtcgaatcttccgacaccattgacaatgtcaagtctaag 254
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3239 ggtaagaccattaccttggaagtcgaatcttccgacaccattgacaatgttaagtctaag 3298
Query: 255 attcaagacaaggaaggtatcccaccagaccaacaaagattgatctttgctggtaagcaa 314
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 3299 atccaagacaaggaaggtattcctccagaccaacaaagattgatctttgctggtaagcaa 3358
Query: 315 ttggaagatggtagaaccttgtctgactacaacatccaaaaggaatccactttgcacttg 374
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3359 ttggaagatggtagaactttgtccgactacaacatccaaaaggaatccactttgcacttg 3418
Query: 375 gttttgagattgagaggtggt 395
|| ||||||||||||||||||
Sbjct: 3419 gtcttgagattgagaggtggt 3439
>3x_Contig1793
Length = 40499
Score = 297 bits (150), Expect = 2e-80
Identities = 204/222 (91%)
Strand = Plus / Plus
Query: 176 tttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 235
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8644 tttcgtcaaaaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 8703
Query: 236 tgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaacaaagatt 295
|| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 8704 cgataacgtcaagtctaagattcaagacaaagaaggtatccctccagaccaacaaagatt 8763
Query: 296 gatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaacatccaaaa 355
|| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 8764 aatttttgcaggtaagcagttggaagatggcagaaccttgtccgattacaacatccaaaa 8823
Query: 356 ggaatccactttgcacttggttttgagattgagaggtggtat 397
|||||||||||||| | ||||||||||| |||||||||||
Sbjct: 8824 agaatccactttgcatcttgttttgagattaagaggtggtat 8865
Score = 283 bits (143), Expect = 3e-76
Identities = 200/219 (91%)
Strand = Plus / Plus
Query: 176 tttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 235
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9328 tttcgtcaaaaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 9387
Query: 236 tgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaacaaagatt 295
|| || ||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct: 9388 cgataacgtcaagtctaagattcaagacaaagaaggtattcctccagaccaacaaagatt 9447
Query: 296 gatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaacatccaaaa 355
|| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 9448 aatttttgcaggtaagcagttggaagatggcagaaccttgtctgactataacatccaaaa 9507
Query: 356 ggaatccactttgcacttggttttgagattgagaggtgg 394
|||||||||||| || | || |||||||| ||||||||
Sbjct: 9508 ggaatccactttacatcttgtcttgagattaagaggtgg 9546
Score = 281 bits (142), Expect = 1e-75
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 176 tttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 235
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8872 tttcgtcaaaaccttaaccggtaagaccatcactttggaagtcgaatcttccgacaccat 8931
Query: 236 tgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaacaaagatt 295
|| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 8932 cgataacgtcaagtctaagattcaagacaaagaaggtatccctccagaccaacaaagatt 8991
Query: 296 gatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaacatccaaaa 355
|| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 8992 aatttttgcaggtaagcagttggaagatggcagaaccttgtccgattacaacatccaaaa 9051
Query: 356 ggaatccactttgcacttggttttgagattgagaggtggtat 397
|||||||||||||| | ||||||||||| |||||||||||
Sbjct: 9052 agaatccactttgcatcttgttttgagattaagaggtggtat 9093
Score = 281 bits (142), Expect = 1e-75
Identities = 202/222 (90%)
Strand = Plus / Plus
Query: 176 tttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 235
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9100 tttcgtcaaaaccttaaccggtaagaccatcactttggaagtcgaatcttccgacaccat 9159
Query: 236 tgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaacaaagatt 295
|| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 9160 cgataacgtcaagtctaagattcaagacaaagaaggtatccctccagaccaacaaagatt 9219
Query: 296 gatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaacatccaaaa 355
|| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 9220 aatttttgcaggtaagcagttggaagatggcagaaccttgtctgactataacatccaaaa 9279
Query: 356 ggaatccactttgcacttggttttgagattgagaggtggtat 397
|||||||||||| || | || |||||||| |||||||||||
Sbjct: 9280 ggaatccactttacatcttgtcttgagattaagaggtggtat 9321
Score = 234 bits (118), Expect = 3e-61
Identities = 196/222 (88%)
Strand = Plus / Plus
Query: 176 tttcgtcaagaccttgactggtaagaccatcactttggaagtcgaatcttccgacaccat 235
|||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct: 8416 tttcgttaagactttaactggtaagactatcactttggaagttgaatcttctgacaccat 8475
Query: 236 tgacaatgtcaagtctaagattcaagacaaggaaggtatcccaccagaccaacaaagatt 295
|| || || || || |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 8476 cgataacgtgaaatcgaagattcaagacaaagaaggtatccctccagaccaacaaagatt 8535
Query: 296 gatctttgctggtaagcaattggaagatggtagaaccttgtctgactacaacatccaaaa 355
|| ||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 8536 aatttttgcaggtaagcagttggaagatggcagaaccttgtctgactataacatccaaaa 8595
Query: 356 ggaatccactttgcacttggttttgagattgagaggtggtat 397
|||||||||||| || | || |||||||| |||||||||||
Sbjct: 8596 ggaatccactttacatcttgtcttgagattaagaggtggtat 8637
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8604
Number of Sequences: 1807
Number of extensions: 8604
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 3
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)