BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1354 0.0
>3x_Contig1622
Length = 13445
Score = 1354 bits (683), Expect = 0.0
Identities = 711/718 (99%), Gaps = 2/718 (0%)
Strand = Plus / Minus
Query: 53 cttagctacgaggtgtattcttgggaaaatcaccagcagatgagaaaaggaaccgagtag 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cttagctacgaggtgtattcttgggaaaatcaccagcagatgagaaaaggaaccgagtag 672
Query: 113 tttatctctaatgattcgtaaagatagataatactgattaaaatgtgtaaagcgcgcaat 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tttatctctaatgattcgtaaagatagataatactgattaaaatgtgtaaagcgcgcaat 612
Query: 173 cacttgcaattgagcgacgagttcattttattgatgagagcagcaattttgtacaggaat 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cacttgcaattgagcgacgagttcattttattgatgagagcagcaattttgtacaggaat 552
Query: 233 agtgatacagttgaataaacagttgtgatttgtcgaagcgagattcataaagatggtggg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtgatacagttgaataaacagttgtgatttgtcgaagcgagattcataaagatggtggg 492
Query: 293 gatagtttgtcaggtgttaaagtttcttttcatctgaaagcttactgtccaaggttttta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gatagtttgtcaggtgttaaagtttcttttcatctgaaagcttactgtccaaggttttta 432
Query: 353 atgcaacttgatataatagcaacatgatactactttgtatacttgtccaaataaatcttg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atgcaacttgatataatagcaacatgatactactttgtatacttgtccaaataaatcttg 372
Query: 413 gtccaacaccgctgaataatccagcgagaccttctgtcttgtaaacggtcatcatgcctt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtccaacaccgctgaataatccagcgagaccttctgtcttgtaaacggtcatcatgcctt 312
Query: 473 tcgtaatggaatttgtcaacgtttgctgctttaaattctgagaactattttcagggatat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcgtaatggaatttgtcaacgtttgctgctttaaattctgagaactattttcagggatat 252
Query: 533 ctggtagctgtgtctggattcttgtctttacaacatctaatggagttgttatgataccag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ctggtagctgtgtctggattcttgtctttacaacatctaatggagttgttatgataccag 192
Query: 593 caagaccacctgcagcagcaccgggtattatttcgttactcagagataaatcttcatcaa 652
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 191 caagaccacctgcagcagcaccggtaattatttcgttactcagagataaatcttcatcaa 132
Query: 653 acgttttattctctactgcgaatgccagttgnctaaatttctcataaaatgcaaattgta 712
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 131 acgttttattctctactgcgaatgcaagttgtctaaatttctcataaaatgcaaattgta 72
Query: 713 accccagaaaaacggtagatcccgactcaaggttgctttattaccaaagaataaagtt 770
| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 71 a-cccag-aaaacggtagatcccgactcaaggttgctttataaccaaagaataaagtt 16
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6627
Number of Sequences: 1807
Number of extensions: 6627
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)