BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG12FM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1351 1515 0.0
>3x_Contig1351
Length = 9242
Score = 1515 bits (764), Expect = 0.0
Identities = 851/872 (97%), Gaps = 6/872 (0%)
Strand = Plus / Plus
Query: 86 ggaccaatatttctctgaacagcagatgtagcattagaataaactacaccccaactacat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 ggaccaatatttctctgaacagcagatgtagcattagaataaactacaccccaactacat 3953
Query: 146 ctaagggtatagtaatgaatatgagagccagacctgccccatcttgctagtttcgcttcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ctaagggtatagtaatgaatatgagagccagacctgccccatcttgctagtttcgcttcg 4013
Query: 206 taatgactatgtttttttaacataccttcacgtgatgtacatacaaaatatggacacctc 265
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 taatgactatgcatatataacataccttcacgtgatgtacatacaaaatatggacacctc 4073
Query: 266 aaatagtactgaacccaccaaaaataacatataaatacttgaagtgatacacaatcaccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 aaatagtactgaacccaccaaaaataacatataaatacttgaagtgatacacaatcaccg 4133
Query: 326 acaattaaatgacggtcagtagaaatattttccacttgtcgatagttctcacctcatatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 acaattaaatgacggtcagtagaaatattttccacttgtcgatagttctcacctcatatt 4193
Query: 386 catcatccagatcattgcctttgctagcttaatggaaaaaaactcgattagagaaattaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 catcatccagatcattgcctttgctagcttaatggaaaaaaactcgattagagaaattaa 4253
Query: 446 gataaatatcaaattgatacctatccattcatagagaaatttgatatggctccagacatg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 gataaatatcaaattgatacctatccattcatagagaaatttgatatggctccagacatg 4313
Query: 506 aatatcaattgaggcctgatctgtttttccaattagggcaaccacaattcggtgtagaag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 aatatcaattgaggcctgatctgtttttccaattagggcaaccacaattcggtgtagaag 4373
Query: 566 atgatcgatcaattcgcagtctttacgccagcaggtaatcttctttatggctataattcg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 atgatcgatcaattcgcagtctttacgccagcaggtaatcttctttatggctataattcg 4433
Query: 626 ttaaacaaaaagttctctgaaactcaaatcaatagatttgtctctgagtttatcagccag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 ttaaacaaaaagttctctgaaactcaaatcaatagatttgtctctgagtttatcagccag 4493
Query: 686 ccggtgaaggatgtgacttccaaatttcctattatatccacgtcagatactagttacatg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 ccggtgaaggatgtgacttccaaatttcctattatatccacgtcagatactagttacatg 4553
Query: 746 tatcatgaaacaaagcagccacatctgtttctcgttgtatcgtttgcgtcgtcagaaatc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4554 tatcatgaaacaaagcagccacatctgtttctcgttgtatcgtttgcgtcgtcagaatcc 4613
Query: 806 attcaatttacgggctg-agcagaatctgtggggtgttcttgcaactaagctatgggaaa 864
|||||||| || ||||| |||||||||||| || ||||||||||||||||||||||| ||
Sbjct: 4614 attcaattaac-ggctgaagcagaatctgt-ggttgttcttgcaactaagctatggg-aa 4670
Query: 865 tcgttaggtttgtatgaagtgattcttgtacacattttctgggaaagg-aagaaaaaagt 923
|||||||||||| |||| |||||||||| ||| ||||||||||||| |||||||| ||
Sbjct: 4671 tcgttaggtttgaatgaggtgattcttg-acaacatttctgggaaaggaaagaaaaatgt 4729
Query: 924 tcacaactttagtttcatcactgaaggtgctt 955
|||||||||||| |||||||||||||||||||
Sbjct: 4730 tcacaactttaggttcatcactgaaggtgctt 4761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7408
Number of Sequences: 1807
Number of extensions: 7408
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)