BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZG12RM1.SCF screened BAC_end
(883 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1255 0.0
>3x_Contig1062
Length = 5564
Score = 1255 bits (633), Expect = 0.0
Identities = 787/820 (95%), Gaps = 15/820 (1%)
Strand = Plus / Minus
Query: 47 aggattaaccaaacgccacgttttttctaaatcttgagatgatagattgatatacttcga 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2825 aggattaaccaaacgccacgttttttctaaatcttgagatgatagattgatatacttcga 2766
Query: 107 tctaacggcggaggatagtgaaacataagatacactattgtctctagaggttatggctga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2765 tctaacggcggaggatagtgaaacataagatacactattgtctctagaggttatggctga 2706
Query: 167 ttcataaattgattcgtattgtgatcttatcatctcttgatatataccaatcaacttctt 226
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2705 ttcataaattgattcgtattgtga-cttatcatctcttgatatataccaatcaacttctt 2647
Query: 227 tttgataatcgtctacagctggcgaagatgtcggaacattgaccacagaacttgtttctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 tttgataatcgtctacagctggcgaagatgtcggaacattgaccacagaacttgtttctg 2587
Query: 287 ctgttccgctactacgttcagtttttctttgtttgactaattcggcttttgaaccgggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 ctgttccgctactacgttcagtttttctttgtttgactaattcggcttttgaaccgggaa 2527
Query: 347 tcaaccaatctggcaattcatctggtacagaatctatgtttttattaaccatgtcaaata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tcaaccaatctggcaattcatctggtacagaatctatgtttttattaaccatgtcaaata 2467
Query: 407 tcattctcatacaaatcacaaactcttcaaaatctagttgatcatcatcatcgatatcgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tcattctcatacaaatcacaaactcttcaaaatctagttgatcatcatcatcgatatcgg 2407
Query: 467 ccaaaaaccatattttgttaagtatcgaggtgtccaatttagaattgaaaaggataggca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 ccaaaaaccatattttgttaagtatcgaggtgtccaatttagaattgaaaaggataggca 2347
Query: 527 gtacttgatcatgggtcaacttattttccaccggtttcaatccggagtaaatttgccaat 586
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2346 gtacttgatcatgggtcaacttattttccaccggtttcaatccggagaaaatttgccaat 2287
Query: 587 actttttgatctcaaattgttcaagcttt-gcatctt-aattggtatttgaa-tatctgt 643
||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct: 2286 actttttgatctcaaattgttcaagctttggcatcttaaattggtatttgaattatctgt 2227
Query: 644 ggagtcaagcgcgatt-aaatagaagtcagatatc-aattaacactgagctc-aacgtaa 700
|||||||||||||||| ||||||| |||||||||| |||||||||||||||| |||||||
Sbjct: 2226 ggagtcaagcgcgattaaaatagaggtcagatatcaaattaacactgagctcaaacgtaa 2167
Query: 701 tgttttttttgaa-tatgcctgcggtactcac-atcagtc-aagagac-cgaacaatt-- 754
|||||| |||||| |||||||||| ||||||| ||||||| ||||||| |||||| |
Sbjct: 2166 tgttttctttgaagtatgcctgcgttactcacaatcagtcaaagagacaggaacaaataa 2107
Query: 755 aacaagattttgtt-ttcctgctttcgctctaacgtgtctttcggttggaatcgttggga 813
||||||| | |||| | |||||| |||||||| ||||| ||||||| |||||||| |||
Sbjct: 2106 aacaagaatatgttatacctgctatcgctctagcgtgttcttcggtttgaatcgtttgga 2047
Query: 814 accttttctacttc-ataaattgcaattttaaccctttgg 852
||||| |||||||| |||||||||||||| |||| |||||
Sbjct: 2046 accttatctacttcaataaattgcaatttaaaccttttgg 2007
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7794
Number of Sequences: 1807
Number of extensions: 7794
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 883
length of database: 10,358,551
effective HSP length: 16
effective length of query: 867
effective length of database: 10,329,639
effective search space: 8955797013
effective search space used: 8955797013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)