BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH01FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig518 767 0.0
3x_Contig312 367 e-101
>3x_Contig518
Length = 1471
Score = 767 bits (387), Expect = 0.0
Identities = 427/439 (97%), Gaps = 1/439 (0%)
Strand = Plus / Minus
Query: 86 atcaagtcttgagtagcgaggagttacgtatgaagtacgataagttcggtaaagaagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcaagtcttgagtagcgaggagttacgtatgaagtacgataagttcggtaaagaagaag 380
Query: 146 ctatgcctaagaatggcttcgaggatgcaggtgaacagtttgctgcgatattcggtggtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctatgcctaagaatggcttcgaggatgcaggtgaacagtttgctgcgatattcggtggtg 320
Query: 206 aggcatttacgtcttatattggggaattaacgttgttgaagaatattcaaaacacacaag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aggcatttacgtcttatattggggaattaacgttgttgaagaatattcaaaacacacaag 260
Query: 266 agttaagtgaagaggacgaaagagcaaaggaacaagaagcaagtgaaaaggccactcagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agttaagtgaagaggacgaaagagcaaaggaacaagaagcaagtgaaaaggccactcagc 200
Query: 326 aagctcataatttgaataataataacaatgcatctaatggtgatgatgacactaaatctg 385
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aagctcataatgtgaataataataacaatgcatctaatggtgatgatgacactaaatctg 140
Query: 386 ctgaggatagcactaataatggaactgccaagaagctaacatcaggaggcgatgattcgt 445
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 139 ctgaggataggactaataatggaactgccaagaagctaaaatcaggaggagatgattcgt 80
Query: 446 ccaatcccgagactaagaaaaagggtaagctagaagagttcgaagagcagcaaatgttag 505
| ||| ||||||||||| |||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 79 caaataccgagactaaggaaaagggtaagctagaagagttcgaagagctgcaatttttag 20
Query: 506 at-aaagagaagagtatag 523
|| |||||| |||||||||
Sbjct: 19 ataaaagagtagagtatag 1
>3x_Contig312
Length = 1457
Score = 367 bits (185), Expect = e-101
Identities = 204/208 (98%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 671 caataggtgaaatctattgtgaaaaggcgaacatattcttgaaatcacaatatttatggg 730
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2 caataggtgaaatctattgtgaaaaggcgaacatattcttgaaat-acaatatttatggg 60
Query: 731 gttttggaggtttttaccattcagtaaaggctaaaggtggcttagtgatggataccgtac 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttttggaggtttttaccattcagtaaaggctaaaggtggcttagtgatggataccgtac 120
Query: 791 ggaccgtttctgcagccttagatgctcaatctaccatgactgagttggagaaatt-aagg 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 121 ggaccgtttctgcagccttagatgctcaatctaccatgactgagttggagaaattaaagg 180
Query: 850 aaactgcgaactcggnagaaccactaaa 877
||||||||||||||| |||||||||||
Sbjct: 181 aaactgcgaactcggaggaaccactaaa 208
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6302
Number of Sequences: 1807
Number of extensions: 6302
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 2
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)