BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZH01RM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig888                                                         1154   0.0  

>3x_Contig888 
          Length = 2072

 Score = 1154 bits (582), Expect = 0.0
 Identities = 638/650 (98%), Gaps = 5/650 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925  tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 984

                                                                        
Query: 108  atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985  atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 1044

                                                                        
Query: 168  ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 1104

                                                                        
Query: 228  aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 1164

                                                                        
Query: 288  ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 1224

                                                                        
Query: 348  agatccgttaaattggaattgacttcctcaacctgcatcaaataacacaagccctgcttt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 agatccgttaaattggaattgacttcctcaacctgcatcaaataacacaagccctgcttt 1284

                                                                        
Query: 408  gcctcggtatacatcaagtcagatctggaattgtttagagtaactttgtatgcggaagga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 gcctcggtatacatcaagtcagatctggaattgtttagagtaactttgtatgcggaagga 1344

                                                                        
Query: 468  tccaggcttatggtgagttgcgattgtccgttgacggacgttttgtcgaattcaatctga 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 tccaggcttatggtgagttgcgattgtccgttgacggacgttttgtcgaattcaatctga 1404

                                                                        
Query: 528  attttcgaaagaatcttta-cataggatcatcatgtgggtaattctttcagagttccttc 586
            ||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||||
Sbjct: 1405 attttcgaaagaatcttcaccataggatcatcatgt-ggtaattcttccagagttccttc 1463

                                                                        
Query: 587  caatttttctagaatcttgatgaaactttgatgataaatcataagtgatggttttgggat 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 1464 caatttttctagaatcttgatgaaactttgatgataaatcataagtgatggtttt-gaat 1522

                                                              
Query: 647  tatttggccatatctttggagaccaatggttcataatcctttactctctt 696
            ||||| |||||||||||| |||||| || ||||| || ||||||||||||
Sbjct: 1523 tattt-gccatatctttgtagaccattgtttcat-attctttactctctt 1570


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7280
Number of Sequences: 1807
Number of extensions: 7280
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)