BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC10ZH01RM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig888 1154 0.0 >3x_Contig888 Length = 2072 Score = 1154 bits (582), Expect = 0.0 Identities = 638/650 (98%), Gaps = 5/650 (0%) Strand = Plus / Plus Query: 48 tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 984 Query: 108 atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 1044 Query: 168 ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 1104 Query: 228 aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 1164 Query: 288 ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 1224 Query: 348 agatccgttaaattggaattgacttcctcaacctgcatcaaataacacaagccctgcttt 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 agatccgttaaattggaattgacttcctcaacctgcatcaaataacacaagccctgcttt 1284 Query: 408 gcctcggtatacatcaagtcagatctggaattgtttagagtaactttgtatgcggaagga 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 gcctcggtatacatcaagtcagatctggaattgtttagagtaactttgtatgcggaagga 1344 Query: 468 tccaggcttatggtgagttgcgattgtccgttgacggacgttttgtcgaattcaatctga 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 tccaggcttatggtgagttgcgattgtccgttgacggacgttttgtcgaattcaatctga 1404 Query: 528 attttcgaaagaatcttta-cataggatcatcatgtgggtaattctttcagagttccttc 586 ||||||||||||||||| | |||||||||||||||| |||||||||| |||||||||||| Sbjct: 1405 attttcgaaagaatcttcaccataggatcatcatgt-ggtaattcttccagagttccttc 1463 Query: 587 caatttttctagaatcttgatgaaactttgatgataaatcataagtgatggttttgggat 646 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 1464 caatttttctagaatcttgatgaaactttgatgataaatcataagtgatggtttt-gaat 1522 Query: 647 tatttggccatatctttggagaccaatggttcataatcctttactctctt 696 ||||| |||||||||||| |||||| || ||||| || |||||||||||| Sbjct: 1523 tattt-gccatatctttgtagaccattgtttcat-attctttactctctt 1570 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7280 Number of Sequences: 1807 Number of extensions: 7280 Number of successful extensions: 54 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)