BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH02RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1483 0.0
3x_Contig1701 747 0.0
3x_Contig1802 105 2e-22
>3x_Contig1805
Length = 19369
Score = 1483 bits (748), Expect = 0.0
Identities = 779/788 (98%), Gaps = 1/788 (0%)
Strand = Plus / Minus
Query: 49 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8027 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 7968
Query: 109 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7967 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 7908
Query: 169 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7907 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 7848
Query: 229 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7847 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 7788
Query: 289 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7787 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 7728
Query: 349 gtatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7727 gtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 7668
Query: 409 gtagtcaaggagaaagttggctgtgttgattttacatcagatatggttgcatcagattca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7667 gtagtcaaggagaaagttggctgtgttgattttacatcagatatggttgcatcagattca 7608
Query: 469 ctctcggtgacagtggtatcgatagggcaagtagtggtataaatagtggtcatgccatta 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 ctctcggtgacagtggtatcgatagggcaagtagtggtataaatagtggtcatgccatta 7548
Query: 529 cttgttgtagtgacagtagtcaatgagaaggttggctctgttgatgttacatcagacgta 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7547 cttgttgtagtgacagtagtcaatgagaaggttggctctgttgatgttacatcagacgta 7488
Query: 589 gtagtgttactagcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7487 gtagtgttactagcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgag 7428
Query: 649 taaattgtcttgattgttggaattccatcctcaccagttgaggtaacaatttcagtggcg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7427 taaattgtcttgattgttggaattccatcctcaccagttgaggtaacaatttcagtggcg 7368
Query: 709 aaagtggtagtatattcgcctgtccagctggtatacacagttgttgcagtctgaccttgt 768
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7367 aaggtggtagtatattcgcctgtccagctggtatacacggttgttgcagtctgaccttgt 7308
Query: 769 gggggtttcacagtgtagatagtcttcacagttgggaataccatcagatccagttttcgt 828
|||| || |||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 7307 ggggtttcaacagtgtagatagtcttcacagtt-ggaataccatcagatccagtttcggt 7249
Query: 829 gacagttt 836
||||||||
Sbjct: 7248 gacagttt 7241
>3x_Contig1701
Length = 10926
Score = 747 bits (377), Expect = 0.0
Identities = 395/401 (98%)
Strand = Plus / Minus
Query: 49 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8176 acagcgctaccctcgtacgttgatatcaagttggatgtagatgctgtggtagtagttact 8117
Query: 109 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8116 actcgtgtttctgcggtagagcttgtttgtgcttgtctggtttcactttcggatgacaca 8057
Query: 169 tcagaagtgatagcgatgtcggctgatgagacttcagcattttgagaagcggttgttact 228
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8056 tcagaagtgatagcgatttcggctgatgagacttcagcattttgagaagcggttgttact 7997
Query: 229 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7996 tcaacactagaactttggtctttgtttgtacctgtagcaaatgaggtttctctggtagaa 7937
Query: 289 atttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7936 gtttcatcgatctccgactttgaagtgtgatactcattagatgcactttcagtggtagtg 7877
Query: 349 gtatcgataagacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7876 gtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagtgaca 7817
Query: 409 gtagtcaaggagaaagttggctgtgttgattttacatcaga 449
|||||||| ||||| ||||||||||||||| ||||||||||
Sbjct: 7816 gtagtcaatgagaaggttggctgtgttgatgttacatcaga 7776
Score = 454 bits (229), Expect = e-127
Identities = 317/345 (91%), Gaps = 1/345 (0%)
Strand = Plus / Minus
Query: 480 agtggtatcgatagggcaagtagtggtataaatagtggtcatgccattacttgttgtagt 539
||||||||||||||| ||||| ||||| || | || || | || ||||||||||||||
Sbjct: 7880 agtggtatcgataggacaagtggtggtgtagacggtagtaacaccgttacttgttgtagt 7821
Query: 540 gacagtagtcaatgagaaggttggctctgttgatgttacatcagacgtagtagtgttact 599
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 7820 gacagtagtcaatgagaaggttggctgtgttgatgttacatcagacgtaatagtgttact 7761
Query: 600 agcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagtaaattgtctt 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7760 agcccaaccgctaaatgttggtttggtttctgcaggagtttcaactgagtaaattgcctt 7701
Query: 660 gattgttggaattccatcctcaccagttgaggtaacaatttcagtggcgaaagtggtagt 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7700 gattgttggaattccatcctcaccagttgaggtaacaatttcagtggcgaaggtggtagt 7641
Query: 720 atattcgcctgtccagctggtatacacagttgttgcagtctgaccttgtgggggtttcac 779
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||
Sbjct: 7640 atattcgcctgtccagctggtatacacggttgttgcagtctgaccttctggggtctcaac 7581
Query: 780 agtgtagatagtcttcacagttgggaataccatcagatccagttt 824
||||| || || ||||||||| ||||||||||| || |||||||
Sbjct: 7580 ggtgtaaattgttttcacagtt-ggaataccatctgagccagttt 7537
>3x_Contig1802
Length = 45229
Score = 105 bits (53), Expect = 2e-22
Identities = 107/125 (85%)
Strand = Plus / Minus
Query: 333 actttcagtggtagtggtatcgataagacaagtggtggtgtagacggtagtaacaccgtt 392
|||||||||| ||| ||||| ||| |||| || || ||||||||||| |||||||| ||
Sbjct: 24384 actttcagtgagagtagtatcaataggacaggtagtagtgtagacggtggtaacaccatt 24325
Query: 393 acttgttgtagtgacagtagtcaaggagaaagttggctgtgttgattttacatcagatat 452
|||||||||||||||||||||||||||||| |||| | |||||| ||| ||||||| |
Sbjct: 24324 acttgttgtagtgacagtagtcaaggagaagattggttctgttgaagttatatcagatgt 24265
Query: 453 ggttg 457
|||||
Sbjct: 24264 ggttg 24260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5497
Number of Sequences: 1807
Number of extensions: 5497
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 3
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)