BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH03FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1667 1427 0.0
>3x_Contig1667
Length = 12071
Score = 1427 bits (720), Expect = 0.0
Identities = 831/858 (96%), Gaps = 9/858 (1%)
Strand = Plus / Minus
Query: 86 ccagccatagatttaagcttctttttaacttttcgtgggtatgctgaatgtctaggacta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5502 ccagccatagatttaagcttctttttaacttttcgtgggtatgctgaatgtctaggacta 5443
Query: 146 aatgcggaacttgtttgctgtaatgtcaacgcagattgcatagtaccaggtgacaaggtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5442 aatgcggaacttgtttgctgtaatgtcaacgcagattgcatagtaccaggtgacaaggtg 5383
Query: 206 tcagtttcattttttttgatatcagcatcatccaccaagttgttctcattactaggatcg 265
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5382 tcagtttcagctgagttgatatcagcatcatccaccaagttgttctcattactaggatcg 5323
Query: 266 tcgtaatttaagtcaggtagtttttcgttgatacctagcggggaatcaaccttgttgaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5322 tcgtaatttaagtcaggtagtttttcgttgatacctagcggggaatcaaccttgttgaag 5263
Query: 326 tttaccaatatttgagaaccattcatttcaagatcttttaagagagagttcaccttttgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5262 tttaccaatatttgagaaccattcatttcaagatcttttaagagagagttcaccttttgt 5203
Query: 386 ttcatggcatttgcgttacctttgaaaaatacaaagaagtattcatcaacggcatacgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5202 ttcatggcatttgcgttacctttgaaaaatacaaagaagtattcatcaacggcatacgtt 5143
Query: 446 gatagattctctagtgcctttattcttaaagttccactcttatctaaaatactagtttcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5142 gatagattctctagtgcctttattcttaaagttccactcttatctaaaatactagtttcc 5083
Query: 506 tcaagatctacaatgttttgaagagggattttgatagtcatagtgttggtatcagagtgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5082 tcaagatctacaatgttttgaagagggattttgatagtcatagtgttggtatcagagtgc 5023
Query: 566 tgagaagcaaacatctgttttttgatgctactcacccagtgtcttgcagaatggaaagag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5022 tgagaagcaaacatctgttttttgatgctactcacccagtgtcttgcagaatggaaagag 4963
Query: 626 tcagctttcaataccagcgactgatctttaatactcaattcaaactttgtntggggttgt 685
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4962 tcagctttcaataccagcgactgatctttaatactcaattcaaactttgtt--gggttgt 4905
Query: 686 tctcacttgaagtcatttgcacgctgctaatatctctcaaatcaatagtc-aaaggggga 744
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4904 tctcacttgaagtcatttgcacgctgctaatatctctcaaatcaatagtcaaaaggggga 4845
Query: 745 aatatagatctgtcgaaaagttatgaaagcttaatgtatgacccttcaaaaccacccaat 804
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844 aatatagatctgtcgaagagttatgaaagcttaatgtatgacccttcaaaaccacccaat 4785
Query: 805 aacgattgaaatttgcttaaaaactggaccgctgatgaaacgcaacgacccattgacatt 864
||||| ||| |||||| | ||||| |||||||||||| ||||||||||||| |||||||
Sbjct: 4784 aacga-tgagatttgc-tcaaaacgtgaccgctgatgagacgcaacgacccagtgacatt 4727
Query: 865 gaaattccga-tccaaattcggtattgaacgcgaaaaaaaaaaagtgtttgtttagtcaa 923
|||| ||||| || || ||||||| |||||||||| ||||||| ||||||| ||||||||
Sbjct: 4726 gaaa-tccgactcaaagttcggta-tgaacgcgaagaaaaaaaggtgtttg-ttagtcaa 4670
Query: 924 ttatgcatgtccttgtat 941
|||||||||||||||||
Sbjct: 4669 gtatgcatgtccttgtat 4652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,430
Number of Sequences: 1807
Number of extensions: 12430
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)