BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH03RM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1754 965 0.0
>3x_Contig1754
Length = 26052
Score = 965 bits (487), Expect = 0.0
Identities = 536/547 (97%), Gaps = 4/547 (0%)
Strand = Plus / Plus
Query: 48 aacatagacaagatgaacatgagacagcgacagcaaaaattccagttagagcatgattca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14549 aacatagacaagatgaacatgagacagcgacagcaaaaattccagttagagcatgattca 14608
Query: 108 atattcagaatggatttccacgttccaagcagagccttagctcacttaatgtttggtgac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14609 atattcagaatggatttccacgttccaagcagagccttagctcacttaatgtttggtgac 14668
Query: 168 aaatcaacagttttccacgaatgtacgtttttatctagatcgaagaccaaacatgatgct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14669 aaatcaacagttttccacgaatgtacgtttttatctagatcgaagaccaaacatgatgct 14728
Query: 228 gtaggtgcgtggttcatcaatccagagactaaagagctcgtacggaagatgagatttcgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14729 gtaggtgcgtggttcatcaatccagagactaaagagctcgtacggaagatgagatttcgt 14788
Query: 288 ctaagactagccagagcacttatttctgataataaagttcatcggtcgacgaacaccgat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14789 ctaagactagccagagcacttatttctgataataaagttcatcggtcgacgaacaccgat 14848
Query: 348 ttcagttacatggatattttacagactctaacaaaaacgtctgagaatttttattatgag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14849 ttcagttacatggatattttacagactctaacaaaaacgtctgagaatttttattatgag 14908
Query: 408 attgatcaaaagacaggcttcttttctcttcctttaactaaattattttgcattgagaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14909 attgatcaaaagacaggcttcttttctcttcctttaactaaattattttgcattgagacg 14968
Query: 468 aagtatgtgataatcgatacccct-aaaatgacttttacacc-aaattaggaaaaccccg 525
||||||||||||||||||| |||| ||||||||| | ||||| |||||||||||||||||
Sbjct: 14969 aagtatgtgataatcgataaccctaaaaatgactataacaccaaaattaggaaaaccccg 15028
Query: 526 ggttcatcttgttcattatacaccttattacaacgttatttttgggaattcaaaactctt 585
|||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
Sbjct: 15029 ggttcatcttgttcattataca-cttattacaacgttatttttgtgaattc-aaactcat 15086
Query: 586 taaaacc 592
|||||||
Sbjct: 15087 taaaacc 15093
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,029
Number of Sequences: 1807
Number of extensions: 16029
Number of successful extensions: 188
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)