BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH04FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1441 0.0
>3x_Contig1463
Length = 9363
Score = 1441 bits (727), Expect = 0.0
Identities = 782/796 (98%), Gaps = 4/796 (0%)
Strand = Plus / Plus
Query: 88 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tcaccaagtggaggtagtgctgttcccggtgcaggaaacatgaccggaggtgttaatgat 1826
Query: 148 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 tctgccatcccaggttctgacctgatgatgcattatccccaacagtatatgaaccataat 1886
Query: 208 gggcaaaggtttttgttctggatgaatccggatttgaattctagtgccatcgacgacacc 267
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 gggcaaaggccaatgttctggatgaatccggatttgaattctagtgccatcgacgacacc 1946
Query: 268 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 actgcaggcgaagatccgcagaatcaggattcctttgtgcgcggtgcatcattcacttta 2006
Query: 328 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gaatcttctgaacaggggaatgatgccaaggtgccaggtgctaacacttctagaagacaa 2066
Query: 388 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 actttccatgcagtgtcagctactgacttgttgaacaattctacttccagtcccactgaa 2126
Query: 448 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 acgacggatgccactggtaccaatgcatcagcaacatcacccgaagcttctgcctcgaaa 2186
Query: 508 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 aaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttacaccggtgcattg 2246
Query: 568 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 ctgcaaccaaatcctgtactatctggccatccactgggtcatcatccccatcctatcggt 2306
Query: 628 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tccccattccctggttacggttttaatacagctttctctcctgtcccgggccctactaac 2366
Query: 688 acgttgaatgcaggttctccagccatctncgcagatggcaaagaagc-nacagcagcggc 746
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 2367 acgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaaacagcagcggc 2426
Query: 747 gatccaagtggccaatctaaccgtcatgtacactctgggaactaattcccccaggattga 806
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 2427 gatccaagtggccaatctaaccgtcatgtacactct-ggaactaatt-ccccaggattga 2484
Query: 807 gtcaacctggtagtctgcccatgtcaaggacttaacccgtggatgtttgctgctcctcac 866
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 2485 gtcaacctggtagtctgccaatgtc-aggacctaacccgtggatgtttgctgctcctcac 2543
Query: 867 ggnagtccttacttcc 882
|| |||||| ||||||
Sbjct: 2544 ggtagtcctaacttcc 2559
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3781
Number of Sequences: 1807
Number of extensions: 3781
Number of successful extensions: 21
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)