BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH04RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig220 1072 0.0
>3x_Contig220
Length = 1055
Score = 1072 bits (541), Expect = 0.0
Identities = 567/573 (98%), Gaps = 2/573 (0%)
Strand = Plus / Plus
Query: 47 cgttgcttctggttggctgtcaactcatcatccccctcatctttccctacagtcgattcc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cgttgcttctggttggctgtcaactcatcatccccctcatctttccctacagtcgattcc 524
Query: 107 a-tatggctctgggagcagtgtattgtcctgtaagagaatgtcgctggcccgacttttcg 165
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aatatggctctgggagcagtgtattgtcctgtaagagaatgtcgctggcccgacttttcg 584
Query: 166 aacttgatagcttccattttaagtacagctgtttaataccaaactcggcaatagcaataa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aacttgatagcttccattttaagtacagctgtttaataccaaactcggcaatagcaataa 644
Query: 226 agatcctgattggtgcttgcctttcagttatacctttcttccttttgattcaaaggttct 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agatcctgattggtgcttgcctttcagttatacctttcttccttttgattcaaaggttct 704
Query: 286 tgacatcaaaattgttactaagttgtaactcgaatctttaattataaacacatatacaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tgacatcaaaattgttactaagttgtaactcgaatctttaattataaacacatatacaaa 764
Query: 346 acaaagaacgatacttctcaacagagaaaagaggatagtttagttaagaggccagaaaat 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 acaaagaacgatacttctcaacagagaaaagaggatagtttagttaagaggccagaaaat 824
Query: 406 agcctaacttttagaaaagtattatactctgggtccataccgcatgaggttacaaaattg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 agcctaacttttagaaaagtattatactctgggtccataccgcatgaggttacaaaattg 884
Query: 466 gattccagttttgcttctagcagccatcgtgacggctgaagtaga-ctttgaagttaatc 524
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 885 gattccagttttgcttctagcagccatcgtgacggctgaagtagagctttgaagttaatc 944
Query: 525 cagttgacaacgaaacagaatcagttcagcaagatgttatagatgaaagctggaatgcag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 cagttgacaacgaaacagaatcagttcagcaagatgttatagatgaaagctggaatgcag 1004
Query: 585 agccctgggaatcatcgaggattacacagtcct 617
|||| ||||||||||||| || ||||||||||
Sbjct: 1005 agcctggggaatcatcgagaataacacagtcct 1037
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6861
Number of Sequences: 1807
Number of extensions: 6861
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)