BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH05RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1560 0.0
>3x_Contig1792
Length = 28468
Score = 1560 bits (787), Expect = 0.0
Identities = 844/855 (98%), Gaps = 6/855 (0%)
Strand = Plus / Plus
Query: 48 tacttttttgatatctcccattttggcgatgctggaaccaatttcacaacagtccaatgg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731 tacttttttgatatctcccattttggcgatgctggaaccaatttcacaacagtccaatgg 13790
Query: 108 gtcattatcacccttgaaaccgggcaatacttcaataagtggctgttcccatgtctgtgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13791 gtcattatcacccttgaaaccgggcaatacttcaataagtggctgttcccatgtctgtgg 13850
Query: 168 gatagccccatagttatgaatgtatccatggtaagggaaaatgttattgacaaatcgtgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13851 gatagccccatagttatgaatgtatccatggtaagggaaaatgttattgacaaatcgtgg 13910
Query: 228 cttgcctttctttatgtcctgtgtgatggggttaaatggttcggtcttactgatttcaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13911 cttgcctttctttatgtcctgtgtgatggggttaaatggttcggtcttactgatttcaaa 13970
Query: 288 cttcccattactccaacgtggaacctctacgatcatgttacatgttttggcatcaacatc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13971 cttcccattactccaacgtggaacctctacgatcatgttacatgttttggcatcaacatc 14030
Query: 348 taagtctaatggcacatcgtggaaataggacccaatttcaccgtttggcagctgcaagta 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14031 taagtctaatggcacatcgtggaaataggacccaatttcaccgtttggcagctgcaagta 14090
Query: 408 ctgtttaaaagacgatgagtatttgcttccaaccaaaacgttgtggtagtttctagcatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14091 ctgtttaaaagacgatgagtatttgcttccaaccaaaacgttgtggtagtttctagcatg 14150
Query: 468 taaatggttgccaatcaacctcaaatgttgcgaagcccttctcatatctctagacatcaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14151 taaatggttgccaatcaacctcaaatgttgcgaagcccttctcatatctctagacatcaa 14210
Query: 528 ttcccacacagcaactatggaatgaatcctttctgtgggatacccagactcgactggacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14211 ttcccacacagcaactatggaatgaatcctttctgtgggatacccagactcgactggacc 14270
Query: 588 acgattccttagtgtttggttgtaattcggtaagcttgaaatttaatagacaaattatta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14271 acgattccttagtgtttggttgtaattcggtaagcttgaaatttaatagacaaattatta 14330
Query: 648 tttaatcagtgattagtggaaatattacaaaaagataaatttaaaagcttacacaacatg 707
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14331 tttaatcagtgattagtggaaatattacaaaaagataaa-ttaaaagcttacacaacatg 14389
Query: 708 gtaagaagaaatggcttagattggatcttgacgattattcctctctctgaagattatctt 767
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14390 gtaagagaaaatggcttagattggatcttgacgattattcctctctctgaagattatctt 14449
Query: 768 catcttgttcgtcaaacggattagatacaacttgcatttgagaatcattgttaagaaggt 827
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 14450 catcttgttcgtcaaacggattagatacaacttgcatttgagaatcattg-taagaaggt 14508
Query: 828 gggagcaatttcccactcaatagaggcagattctgggaaaacgagcaccttcatccagaa 887
|||||| ||||||||||||||||| ||||||||| | |||||||||||||||| ||| |
Sbjct: 14509 -ggagcagtttcccactcaatagagccagattctgtg-aaacgagcaccttcat-cag-a 14564
Query: 888 aatttcaacgacacc 902
|||||||||||||||
Sbjct: 14565 aatttcaacgacacc 14579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6454
Number of Sequences: 1807
Number of extensions: 6454
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)