BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZH06FM1.SCF screened BAC_end
         (945 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1744                                                        1622   0.0  

>3x_Contig1744 
          Length = 24119

 Score = 1622 bits (818), Expect = 0.0
 Identities = 853/861 (99%), Gaps = 3/861 (0%)
 Strand = Plus / Minus

                                                                         
Query: 87    taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 15854

                                                                         
Query: 147   ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 15794

                                                                         
Query: 207   agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 15734

                                                                         
Query: 267   cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 15674

                                                                         
Query: 327   acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 15614

                                                                         
Query: 387   ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 15554

                                                                         
Query: 447   tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 506
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 15494

                                                                         
Query: 507   tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 566
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 15434

                                                                         
Query: 567   caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 626
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15433 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 15374

                                                                         
Query: 627   ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 686
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15373 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 15314

                                                                         
Query: 687   aaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttctaa 746
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15313 aaaaagaacctataactgttaacgacattggatgtgcaggtgccattgctgcacttctaa 15254

                                                                         
Query: 747   aggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccagttttggttcatg 806
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15253 aggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccagttttggttcatg 15194

                                                                         
Query: 807   ctggtccatttgcaaacatctctattggcgcttcatcagttattgctgacagagttgctt 866
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 15193 ctggtccatttgcaaacatctctattggcgcttcatcagttattgctgacagagttgc-t 15135

                                                                         
Query: 867   ttgaactttgta-gtaagccaaaa-aagctgacgagagtgcagaatctggatattttgtc 924
             |||||  ||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 15134 ttgaaacttgtaggtaagccaaaagaagctgacgagagtgcagaatctggatatgttgtc 15075

                                  
Query: 925   actgaagctgttttcnacttc 945
             |||||||||| |||| |||||
Sbjct: 15074 actgaagctggtttcgacttc 15054


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5363
Number of Sequences: 1807
Number of extensions: 5363
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)