BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH06RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1132 0.0
>3x_Contig1520
Length = 10750
Score = 1132 bits (571), Expect = 0.0
Identities = 671/698 (96%), Gaps = 6/698 (0%)
Strand = Plus / Plus
Query: 37 aagcttatatgtgtagttgaacagtatatacgttgctgtttttcatgcttttaggtactg 96
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 aagcttatatgtgtagttgaacagtatatacgttgctgtttttcatgcttttaggtactg 1038
Query: 97 gcccttgttaatcctgggacaatgaatatagtagatgtggcacgtctgtggcacgtctgg 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 gcccttgttaatcctgggacaatgaatatagtagatgtggcacgtctgtggcacgtctgg 1098
Query: 157 gtcacttagttattcactt--tcccggtgtatttttcaacacccataatacgaattaggt 214
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1099 gtcacttagttattcacatattcccggtgtatttttcaacacccataatacgaattaggt 1158
Query: 215 taaaataggtgaaaaatgtcaactactgagaatttattcctagtcgttattgcacctagc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 taaaataggtgaaaaatgtcaactactgagaatttattcctagtcgttattgcacctagc 1218
Query: 275 cagttcgaaaataaggtgtagtcatcaatatagtttgttgttcgttagcatcattgtatg 334
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1219 c-gttcgaaaataaggtgtagtcatcaatatagtttgttgttcgttagcatcattgaatg 1277
Query: 335 tttttagtgttgttgtgtgtttcgcttagagttccgtgtagacgcaggatttttcagttc 394
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1278 tttttcgtgttgttgtgtgtttcgcttagtgttccgtgtagacgcaggatttttcagttc 1337
Query: 395 taaacgtcaatcaagtatatgctggacatatataagattgaaactagcttgtgacagtta 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 taaacgtcaatcaagtatatgctggacatatataagattgaaactagcttgtgacagtta 1397
Query: 455 atacggttcaacctttcaagatgatgttcgaaagtactggtaacgatcgtgtttcctatg 514
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 aaacggttcaacctttcaagatgatgttcgaaagtactggtaacgatcgtgtttcctatg 1457
Query: 515 cgcacttgagcagacgtgatattatggcacgttatttcaatctttctgcaccagtcggcc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 cgcacttgagcagacgtgatattatggcacgttatttcaatctttctgcaccagtcggcc 1517
Query: 575 atgcaggtgtgccgctttccgagcatgtgattgc-aaacacgacgacagcaatgttgcag 633
||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct: 1518 atgcaggtgtgccgcttccgaagcatgtgattgcaaaacacgacgacagcaatgttgcag 1577
Query: 634 atgataatttca-ctctgctgtttatattaccac-aaggatgatgaatttattcttatgg 691
||||||||| || |||||||||| ||| |||||| ||| |||||||||||||||||| |
Sbjct: 1578 atgataattacacctctgctgttaataataccacaaagaatgatgaatttattcttagtg 1637
Query: 692 aaaagaatttgattttaccattggaatttaaggttaaa 729
|||||| |||| |||||| | ||| |||||||||||
Sbjct: 1638 aaaagatattgaatttacccattgaaattaaggttaaa 1675
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8025
Number of Sequences: 1807
Number of extensions: 8025
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)