BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH07FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1451 1328 0.0
>3x_Contig1451
Length = 8346
Score = 1328 bits (670), Expect = 0.0
Identities = 728/741 (98%), Gaps = 5/741 (0%)
Strand = Plus / Minus
Query: 83 tcctcaacttctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3181 tcctcaacttctcatttccttgaattccaagtgaaacttccaatagcctgtaatatctga 3122
Query: 143 aattgtctggacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgac 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3121 aattgtctggacttctcttaatcaaagttctgtacacaatagaggcttccttagaccgac 3062
Query: 203 caagtttcattaaaatagaagctttcctctctaaccagccatatctatcataaacatcgt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3061 caagtttcattaaaatagaagctttcctctctaaccagccatatctatcataaacatcgt 3002
Query: 263 cggaaatcttttccaaatgctctaaaactctttccaaggattctttatcgttgcctgcct 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3001 cggaaatcttttccaaatgctctaaaactctttccaaggattctttatcgttgcctgcct 2942
Query: 323 tcttgtacaaaagatcattcttgtacatgatacattcgttgttctcatacatttctggtt 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2941 tcttgtacaaaagatcattcttgtacatgatacattcgttgttctcatacatttctggtt 2882
Query: 383 caccc-aacttgccttcagcaagctcttcaaatgtcgaaagagtattgattgcgtcttgc 441
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 caccccaacttgccttcagcaagctcttcaaatgtcgaaagagtattgattgcgtcttgc 2822
Query: 442 gtacgcccattcaaatcttgtgctatggccaatgaggtccaattggcacgatatcctctg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 gtacgcccattcaaatcttgtgctatggccaatgaggtccaattggcacgatatcctctg 2762
Query: 502 tagttttcccagtacttttttctcgattccagcgcgcctttgaaatcatgaatttgagat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 tagttttcccagtacttttttctcgattccagcgcgcctttgaaatcatgaatttgagat 2702
Query: 562 tgcaatgtcgccaaatctctatagatttgagtgtttgtagaaccattttctaatgcggcc 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 tgcaatgtcgccaaatctctatagatttgagtgtttgtagaaccattttctaatgcggcc 2642
Query: 622 ttgaaccactttacagcgtctgagtaatttttcacctgtctgtaataaattcctaaatag 681
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2641 ttgaaccactttacagcgtctgagtaatttttcacctgtctgtaataaattcctaataag 2582
Query: 682 tgtccaccaattggacttacaagagtgccttttattttggataacgctnntatcaatgt- 740
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 2581 tgtccaccaattggacttacaagagtgcctttaattttggataacgct-ttatcaatgta 2523
Query: 741 actagcagcttcttcagg-gtactacagaaatgc-agtttcatcccttcaaaaatataga 798
|||||||||||||||||| ||||||||||| ||| |||| |||||||||||| ||||||
Sbjct: 2522 actagcagcttcttcaggtgtactacagaattgcaagttcaatcccttcaaaattataga 2463
Query: 799 gtccacatgactgctgttctt 819
|||||||||||||||||||||
Sbjct: 2462 gtccacatgactgctgttctt 2442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6799
Number of Sequences: 1807
Number of extensions: 6799
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)