BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH07RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1027 0.0
>3x_Contig1640
Length = 15521
Score = 1027 bits (518), Expect = 0.0
Identities = 585/598 (97%), Gaps = 7/598 (1%)
Strand = Plus / Plus
Query: 47 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13399 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 13458
Query: 107 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13459 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 13518
Query: 167 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagatagggca 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13519 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaagatagggca 13578
Query: 227 gacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13579 gacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattcaa 13638
Query: 287 tagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttacg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13639 tagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttacg 13698
Query: 347 tagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtgttt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13699 tagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtgttt 13758
Query: 407 ttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaatattt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13759 ttttctcaacgttcctctgccacagagaagcaggttggaatttcaacctttcaaatattt 13818
Query: 467 agaccagttttgaaacattctttccggggtttctctatggcttctatttcattcatttat 526
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 13819 agaccag-tttgaaacattc-ttccggggtttctctatggcttctatttcattcatttat 13876
Query: 527 ctgttatcctcaagtatattataatattgggatgtacattgccatgggcaattttaagac 586
|||||||||||||||||| ||||| ||||||||||| |||||||||||| ||||||||
Sbjct: 13877 ctgttatcctcaagtata-tataaatatgggatgtaca-tgccatgggcaa-tttaagac 13933
Query: 587 gaaatcatttaacccgtaaacgactgggtgtttttttttttgggttgaaggtttcctt 644
|||||||| ||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct: 13934 gaaatcatctaaccggtaaacgact-ggtgttttttttttt-ggttgatggtttcctt 13989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 34,232
Number of Sequences: 1807
Number of extensions: 34232
Number of successful extensions: 547
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)