BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH09FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1733 1572 0.0
>3x_Contig1733
Length = 18615
Score = 1572 bits (793), Expect = 0.0
Identities = 833/844 (98%), Gaps = 3/844 (0%)
Strand = Plus / Plus
Query: 86 atacatgcgcgactggtactaaacacgttgaaaatgaaagatctaaaggacaattcggta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5265 atacatgcgcgactggtactaaacacgttgaaaatgaaagatctaaaggacaattcggta 5324
Query: 146 tcccaacgttctcgcaatttgatccataccccgaattgaatagggtatacgaaatcgaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5325 tcccaacgttctcgcaatttgatccataccccgaattgaatagggtatacgaaatcgaac 5384
Query: 206 tattaaataccggtattgctggtgatcatgtcacatccagatcaatttccaaaatcgcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5385 tattaaataccggtattgctggtgatcatgtcacatccagatcaatttccaaaatcgcat 5444
Query: 266 gtggagactatcacacccttgcttgtgactcagtcggggaactttattcttttggtctaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5445 gtggagactatcacacccttgcttgtgactcagtcggggaactttattcttttggtctaa 5504
Query: 326 atacttatggccaactcggccaaagcattagctacgatatggaatatgtaccgttcccaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5505 atacttatggccaactcggccaaagcattagctacgatatggaatatgtaccgttcccaa 5564
Query: 386 agaaggttagcagctttagcggacactttgagaaacatgatttcttgaagtgtgtcgaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5565 agaaggttagcagctttagcggacactttgagaaacatgatttcttgaagtgtgtcgaaa 5624
Query: 446 ttaattgttctggaaacacgtcctttgttagtatacttccacaggatgttcatagatatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5625 ttaattgttctggaaacacgtcctttgttagtatacttccacaggatgttcatagatatt 5684
Query: 506 tcaaaaacaaggactttgcaattgatattgacaatgacaaggataacatcacttattttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5685 tcaaaaacaaggactttgcaattgatattgacaatgacaaggataacatcacttattttg 5744
Query: 566 cctttggtaatggtatccaagggcaattaggtaatggtcatttcaagcattcgcaatcta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5745 cctttggtaatggtatccaagggcaattaggtaatggtcatttcaagcattcgcaatcta 5804
Query: 626 ctcctactcgaatgaaggtgataaacgatctcaaggataataccgtaaattctgataagc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5805 ctcctactcgaatgaaggtgataaacgatctcaaggataataccgtaaattctgataagc 5864
Query: 686 gcatcttgatcagagattggtattgtggagagcagcatgcttttgtaagattaaagaatg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5865 gcatcttgatcagagattggtattgtggagagcagcatgcttttgtaagattaaagaatg 5924
Query: 746 gtgagattatgtgctggggttataatgaaaatggccaacttggtaatgggaaagaagatc 805
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5925 gtgagattatgtgctggggttataatgaaaatggccaacttggtaatggg-aagaagatc 5983
Query: 806 anatgggacanaccagcttacattncctagatgtttaaaaccagntgaaaggttcaacgg 865
| |||||||| ||||||||||||| ||||||| ||| |||||| |||||||||||||||
Sbjct: 5984 aaatgggacaaaccagcttacatt-cctagattgttagaaccaggtgaaaggttcaacgg 6042
Query: 866 cnagaaacctanacatattgtacgacgaaaataataaactagttatttcagacgaacaga 925
| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6043 caag-aacctagacatattgtacgacgaaaataataaactagttatttcagacgaacaga 6101
Query: 926 gtct 929
||||
Sbjct: 6102 gtct 6105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6169
Number of Sequences: 1807
Number of extensions: 6169
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)