BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH09RM1.SCF screened BAC_end
(982 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1694 1588 0.0
>3x_Contig1694
Length = 18020
Score = 1588 bits (801), Expect = 0.0
Identities = 877/897 (97%), Gaps = 4/897 (0%)
Strand = Plus / Minus
Query: 54 gcttcaagattcaattaccattgatcaattgaatgacactgcttgggacttgtatcatgc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10204 gcttcaagattcaattaccattgatcaattgaatgacactgcttgggacttgtatcatgc 10145
Query: 114 tgcgaatgcttctacaaagcagtatggtcatccaacaagagtcattggttctaaaggtca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10144 tgcgaatgcttctacaaagcagtatggtcatccaacaagagtcattggttctaaaggtca 10085
Query: 174 ttggaaaactattgggtacattttatcccaattggatgagcacaaggattactacgatat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10084 ttggaaaactattgggtacattttatcccaattggatgagcacaaggattactacgatat 10025
Query: 234 ttcagtgcaatctttccctgctttaacaggtaaggttaactctttcaacctttcctttgt 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10024 ttcagtgcaatctttccctgctttaacaggtaaggttaactctttcaacctttcctttgt 9965
Query: 294 cggtggtgataaagttcctaccgcaacaccatttgccttgactccacctgtgaagggttt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9964 cggtggtgataaagttcctaccgcaacaccatttgccttgactccacctgtgaagggttt 9905
Query: 354 ccttggtaaattgatcgaaattccaaatttgggatgtgatgatattgactacaaatcctt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9904 ccttggtaaattgatcgaaattccaaatttgggatgtgatgatattgactacaaatcctt 9845
Query: 414 ggttgttccaaagaacagtattgctttgattgaaagaggtcaatgtccttttggtagaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9844 ggttgttccaaagaacagtattgctttgattgaaagaggtcaatgtccttttggtagaaa 9785
Query: 474 gagtaacctagctggtaaacatgggttcaaagcttgcattaatttacgataacgatccgc 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9784 gagtaacctagctggtaaacatgggttcaaagc-tgcattaatttacgataacgatccgc 9726
Query: 534 tatccaaggatggtattaagggtacattggaaaagcctgataaacacactgtggcaacca 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9725 tatccaaggatggtattaagggtacattggaaaagcctgataaacacactgtggcaacca 9666
Query: 594 ttggtgtttcttacaaagaaggtaaaaaattgattgctgctttggaattgcaccaaggcg 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9665 ttggtgtttcttacaaagaaggtaaaaaattgattgctgctttggaattgcaccaaggcg 9606
Query: 654 actattccttatacttcgaagttgattccttcgttaagaatatcaagaccaaaaatatca 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9605 actattccttatacttcgaagttgattccttcgttaagaatatcaagaccaaaaatatca 9546
Query: 714 ttgctgacactaaacacggtgacccctgaaacattgttgcccctgagtgctcattctgac 773
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 9545 ttgctgacactaaacacggtgaccctgaaaacattgttg-ccctgggtgctcattctgac 9487
Query: 774 tctgtcagcaacggtcctggtatcaatgatgatggatctggtgccattttctctgttgac 833
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9486 tctgtcagcaacggtcctggtatcaatgatgatggatctggtgcca-tttctctgttgac 9428
Query: 834 agtcgctaaacaattgactggcctttagatcaaatataaagtcaggttcccatgttgggc 893
|||||||||||||||||||||| | ||||||| |||||||||||||| |||| |||||
Sbjct: 9427 agtcgctaaacaattgactggctataagatcaataataaagtcaggttcgcatggtgggc 9368
Query: 894 ggctgaagaaaaagtcctgctgggatctg-attttatgcagaccctttgagtcctga 949
|||||| ||| ||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 9367 ggctgaggaagaaggtctgctgggatctgtattttatgcagaccatttgagtcctga 9311
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7654
Number of Sequences: 1807
Number of extensions: 7654
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)