BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH10FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1377 1487 0.0
>3x_Contig1377
Length = 8397
Score = 1487 bits (750), Expect = 0.0
Identities = 780/789 (98%), Gaps = 1/789 (0%)
Strand = Plus / Minus
Query: 91 acaaggtaatcaaatcattgaaacattcaaacttgtgcacaccatcagcagtataaatat 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6491 acaaggtaatcaaatcattgaaacattcaaacttgtgcacaccatcagcagtataaatat 6432
Query: 151 tggtggtgtactccgaaacagacctgtacaaatgcgattgtagaggttgggcagcgcatt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6431 tggtggtgtactccgaaacagacctgtacaaatgcgattgtagaggttgggcagcgcatt 6372
Query: 211 cttctgatagagaaacgtgttgtataagcgttttcaagtccacagaatgcttattattga 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6371 cttctgatagagaaacgtgttgtataagcgttttcaagtccacagaatgcttattattga 6312
Query: 271 attccaggatgttactcatggtatcatcactgaatctggtacggtcaaattctttatcga 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6311 attccaggatgttactcatggtatcatcactgaatctggtacggtcaaattctttatcga 6252
Query: 331 gacagcatatcataaattggtccaactgtatgttcctggcatactccattgcacgttcaa 390
|||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 6251 gacagcattttataaattggtccaactgtatgtacctggcatactccattgcacgttcaa 6192
Query: 391 caggaataccaacactgatgaaaaacttgatatcattcttactcaagaagtcatactgtg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 caggaataccaacactgatgaaaaacttgatatcattcttactcaagaagtcatactgtg 6132
Query: 451 ataaagtgttcaagggtccgaagaacacattgttactcaactgttggggtttcatctggt 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6131 ataaagtgttcaagggtccgaagaacacattgttactcaactgttggggtttcatctggt 6072
Query: 511 tcaacgtatgagccaatgcataattattatggtgagacatgtctagttgcttttttccat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6071 tcaacgtatgagccaatgcataattattatggtgagacatgtctagttgcttttttccat 6012
Query: 571 aaagaatatcggaccacagattgtaagtagggtgaaagattgagacagagagcaaaacac 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6011 aaagaatatcggaccacagattgtaagtagggtgaaagattgagacagagagcaaaacac 5952
Query: 631 aggctagttgttaccaatactcgaattatacaaatgaggttcaatgccagttagtaagct 690
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5951 aggctagttgttaccaatactcgatttatacaaatgaggttcaatgccagttagtaagct 5892
Query: 691 cactccgctcttgtcctgagtcaaagccttacgtgagtcgcattgatgaagttagtattc 750
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5891 cactccgctcttgtcctgagtcaaagccttacgtgagtcgcattgatgaggttagtattc 5832
Query: 751 ttttttgccaaaagatcaaaaatctgaaaaatagaaaaatgaatttttcaagctctaaag 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5831 ttttttgccaaaagatcaaaaatctgaaaaatagaaaaatgaatttttcaagctctaaag 5772
Query: 811 gcttattctaataaagtaatggaaatggtgttagctcggtcaaaggctttaatgct-gta 869
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 5771 gcttattctagtaaagtaatggaaatggtgtaagctcggtcaaaggctttaatgctggta 5712
Query: 870 caacgnagg 878
||||| |||
Sbjct: 5711 caacggagg 5703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6463
Number of Sequences: 1807
Number of extensions: 6463
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)