BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC10ZH10RM1.SCF screened BAC_end
         (971 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1522                                                        1362   0.0  

>3x_Contig1522 
          Length = 7810

 Score = 1362 bits (687), Expect = 0.0
 Identities = 739/750 (98%), Gaps = 5/750 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   aatctgtaactccaattcatatccacgtgcatgataaggaacagatttcaacaggaaaag 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4478 aatctgtaactccaattcatatccacgtgcatgataaggaacagatttcaacaggaaaag 4537

                                                                        
Query: 107  aactggggtagctacgaaaagtgagaaataaatatcgtatatatccgagtgaagccaagt 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4538 aactggggtagctacgaaaagtgagaaataaatatcgtatatatccgagtgaagccaagt 4597

                                                                        
Query: 167  gagtttaacgcaccatcagctcactccaaattgtcatcaaacatatacacttacgccttt 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4598 gagtttaacgcaccatcagctcactccaaattgtcatcaaacatatacacttacgccttt 4657

                                                                        
Query: 227  tcaaagaaactcttcaactgtatgtatcaatttgtagcaccatgttttccgtacatatcg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4658 tcaaagaaactcttcaactgtatgtatcaatttgtagcaccatgttttccgtacatatcg 4717

                                                                        
Query: 287  cagaatgtcatatatcatcaaatcttcaggaaagaaaagcagaaaaaaataaaaaaaaaa 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4718 cagaatgtcatatatcatcaaatcttcaggaaagaaaagcagaaaaaaataaaaaaaaaa 4777

                                                                        
Query: 347  taaaaatggactttttacgttgattaaaatccagtttgtaccctatgggtttagacaact 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4778 taaaaatggactttttacgttgattaaaatccagtttgtaccctatgggtttagacaact 4837

                                                                        
Query: 407  agcactctacatttttatttcaggactatataaaggattctacagggtctgtattgagtt 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838 agcactctacatttttatttcaggactatataaaggattctacagggtctgtattgagtt 4897

                                                                        
Query: 467  cggtgatctgtttccaagtgttgttgaatcctatacccggaagagcgctttccagttcgc 526
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4898 cggtgatctgtttccaagtgttgttgaatcctatacccggaag-gcgctttccagttcgc 4956

                                                                        
Query: 527  gtaacttcgttgttctgttttacacatattcgttttattgtggtttttgagacggaatct 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4957 gtaacttcgttgttctgttttacacatattcgttttattgtggtttttgagacggaatct 5016

                                                                        
Query: 587  catcatatcgttttcagtaacagatactatctctgcttgctgagctcaatctatttc-aa 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5017 catcatatcgttttcagtaacagatactatctctgcttgctgagctcaatctatttcaaa 5076

                                                                        
Query: 646  atatagaccgttaaaacaanttgacacgataccttcgtttgtgaaagtgcgtgtgtgatt 705
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5077 atatagacggttaaaacaagttgacacgataccttcgtttgtgaaagtgcgtgtgtgatt 5136

                                                                        
Query: 706  tttttcccattgggtatcttatctaatctcataaattttttctcttggaaatgggaggga 765
            ||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 5137 tttttcccattggttatctaatctaatctcataatttttttctctt-gaaatggtaggga 5195

                                          
Query: 766  atgttggggaatgacttctggcagcagcac 795
            ||||| ||||||||| ||||||||||||||
Sbjct: 5196 atgtt-gggaatgac-tctggcagcagcac 5223


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9286
Number of Sequences: 1807
Number of extensions: 9286
Number of successful extensions: 309
Number of sequences better than 1.0e-20: 1
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)