BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH11FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1331 1501 0.0
>3x_Contig1331
Length = 5830
Score = 1501 bits (757), Expect = 0.0
Identities = 810/822 (98%), Gaps = 6/822 (0%)
Strand = Plus / Plus
Query: 87 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 tgaggttggtagaagtctctaaagagtcattatacagcgaccgcaagaacccatatgaag 1946
Query: 147 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 atgaaaacccaacaaccagaatttacacaattatcaagaaaatggcgactgaaaatggta 2006
Query: 207 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 gatttaataaaagattaccgtatgatgctattgtaagaacgattagatcaagaggtttca 2066
Query: 267 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 ctatgctgcaactggtaagctgtatcaaagagtatgagtatcttaatgtttggcatcaaa 2126
Query: 327 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 tagaagacggaaacaccttgctatttattgacgatattgatgatacaacggaagacaatt 2186
Query: 387 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 ctgatataactaacccttcgacgcaaaggacaccggatgaagatgtcgatatggaataat 2246
Query: 447 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 acctgactatctgcataccactaatctgttttgatccaataatgcctttattccttattt 2306
Query: 507 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 tagttttaaacctagtttaacgacaaatttgtattactatatactaacgtttaagtaact 2366
Query: 567 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 tctaatgtgcctcttctcccagatagactgaacgatgcagaagtaatcacagtctatctt 2426
Query: 627 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 tcaaaaccaaaattaatttgtcgaattcaaaatctatctattttgtgcataaacctagct 2486
Query: 687 tatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaacc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 tatgccatctactacttagtctaaggtaagtttacatatttgtttacaacttctgaaacc 2546
Query: 747 tcagagagtagttcttgtttcctctttagatcacaccatgagccttcaatactttgtctg 806
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2547 tcagagagtagttcttgtttcctcttaggatcacaccatgagccttcaatactttgtctg 2606
Query: 807 gncgatcttagcccaaactgctttanaccaaccaaatctggaatacacttttcagatagt 866
| ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 2607 g-cgatcttagcccaaactgctttagaccaaccaaatctggaatacac-ttccagatagt 2664
Query: 867 tctgtnaaaatgtaccctnnncaaaat-agctggatcatcag 907
||||| || ||||||||| |||||| ||||||||||||||
Sbjct: 2665 tctgt-aagatgtaccct--ccaaaataagctggatcatcag 2703
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6266
Number of Sequences: 1807
Number of extensions: 6266
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)