BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH11RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 1423 0.0
>3x_Contig1198
Length = 5263
Score = 1423 bits (718), Expect = 0.0
Identities = 788/806 (97%), Gaps = 4/806 (0%)
Strand = Plus / Plus
Query: 47 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 162
Query: 107 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 222
Query: 167 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 282
Query: 227 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 342
Query: 287 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 402
Query: 347 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 462
Query: 407 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 522
Query: 467 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 582
Query: 527 cagccgtttggcagagtgcactgcttcaaagaaacgacaacaaagcatcttcatccatgg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagccgtttggcagagtgcactgcttcaaagaaacgacaacaaagcatcttcatccatgg 642
Query: 587 attctctattacaaagcattcaggcaaatttgaatcatacctttgattataacacttatg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 attctctattacaaagcattcaggcaaatttgaatcatacctttgattataacacttatg 702
Query: 647 ccttgttgcatctggtactcaaaacatgcgatgaatcagggttgcatttatatgctcttt 706
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 703 ccttgttgcatctggtactcaaaacatgcgatgaatcagggttgcatttagatgctctta 762
Query: 707 aagttaagttcatcaatagtttgatttacaa-attcagcatttcaagggagatttaaaat 765
| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 763 aggttaagttcatcaatagtttgatttacaatattcagcatttcaacggagatttcaaat 822
Query: 766 tacttgcatggctgcttcaagg-tttggtcatttcaacaagtaactcttaaac-acaatt 823
||||||||||||||| |||||| |||| ||||| | ||||||||||| |||| ||||||
Sbjct: 823 tacttgcatggctgc-tcaaggttttgttcattcaagcaagtaactctaaaacaacaatt 881
Query: 824 cttgtttcaccgtttttttcaaaggc 849
| |||| ||||||| ||||| |||||
Sbjct: 882 cctgttccaccgttattttcgaaggc 907
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7723
Number of Sequences: 1807
Number of extensions: 7723
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)