BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC10ZH12FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig680 1556 0.0
>3x_Contig680
Length = 2471
Score = 1556 bits (785), Expect = 0.0
Identities = 839/854 (98%), Gaps = 3/854 (0%)
Strand = Plus / Minus
Query: 86 ttagaaccaggaaacttatgcagcttttggatcatgctttcaatcaaactaagatgaagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 ttagaaccaggaaacttatgcagcttttggatcatgctttcaatcaaactaagatgaagc 937
Query: 146 tttcatccaccacaaggagagaattgataatgaagcaaatggtcccaaaattcaagtcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 tttcatccaccacaaggagagaattgataatgaagcaaatggtcccaaaattcaagtcat 877
Query: 206 ttacccagctatagtacttcagcggattccccttcaagctctctcaagcatttacagata 265
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttacccagctaaaggacttcagcggattccccttcaagctctctcaagcatttacagata 817
Query: 266 agtttcaatcgggagaatttcccaacgcagacagatttctttcctttgtgaaatcgagat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 agtttcaatcgggagaatttcccaacgcagacagatttctttcctttgtgaaatcgagat 757
Query: 326 tagatgagagtttctataaaaacgaacacaacatcaaatccatagttttaggaagtgata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tagatgagagtttctataaaaacgaacacaacatcaaatccatagttttaggaagtgata 697
Query: 386 cagcttatgttccaggacacatggagttagtaacaaactcgtactcttttgtttccagcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cagcttatgttccaggacacatggagttagtaacaaactcgtactcttttgtttccagcg 637
Query: 446 tcagaaataacgaaaacatccaagctttttcatttatgctattgaacatgggttctgagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tcagaaataacgaaaacatccaagctttttcatttatgctattgaacatgggttctgagg 577
Query: 506 gagtccgtaaaccagttgcattggtttacatcgttacaaaggcaaacccaggggacgaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gagtccgtaaaccagttgcattggtttacatcgttacaaaggcaaacccaggggacgaat 517
Query: 566 tgttgatgttcactggtgactacattgatgattctaagttatccccgatggtcatctatg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgttgatgttcactggtgactacattgatgattctaagttatccccgatggtcatctatg 457
Query: 626 tacgtgctctcagcccattttcgaaatgttgcttcattacagacgtcggagaaactggag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tacgtgctctcagcccattttcgaaatgttgcttcattacagacgtcggagaaactggag 397
Query: 686 caaatgcacaatatagtgtaaaacgaanaaaggacggcagtaaagaatacacgtacgaaa 745
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 caaatgcacaatatagtgtaaaacgaaaaaaggacggcagtaaagaatacacgtacgaaa 337
Query: 746 gtgattaaaagaactaacgccctcacctaggtactgacatgacattattaagaatcatca 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtgattaaaagaactaacgccctcacctaggtactgacatgacattattaagaatcatca 277
Query: 806 cttcacaaaatctatttaagttgacacaaaccgtcacaatttatacatattcatcaatgn 865
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcacaaaatctatttaagttgacacaaaccgtcacaatttatacatattcatcaatga 217
Query: 866 aaataaaaaaatc-tattacacatatcccagcaaactattagaatncatttgaaacatat 924
|| ||||| ||| ||| |||||||||| |||||||||| || || |||||||| ||||
Sbjct: 216 aataaaaaagatcatataacacatatccaagcaaactataag-attcatttgaaccata- 159
Query: 925 tgaaaacatgcttt 938
||||||||||||||
Sbjct: 158 tgaaaacatgcttt 145
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6578
Number of Sequences: 1807
Number of extensions: 6578
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)