BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA01FM1.SCF screened BAC_end
(877 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1112 0.0
>3x_Contig1707
Length = 16216
Score = 1112 bits (561), Expect = 0.0
Identities = 614/629 (97%), Gaps = 2/629 (0%)
Strand = Plus / Minus
Query: 72 tgtgaatacttcaccattcctaatgaaacttaaactttggaagctgcttctcaactattt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13691 tgtgaatacttcaccattcctaatgaaacttaaactttggaagctgcttctcaactattt 13632
Query: 132 cgccagtagaaaagaccaacttaggttccaaaactgttttttcagttcgatcaagttttt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13631 cgccagtagaaaagaccaacttaggttccaaaactgttttttcagttcgatcaagttttt 13572
Query: 192 actagctagattgtcctctgaagagtatcaaatacaatcacaacttcaacgccagcaaac 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13571 actagctagattgtcctctgaagagtatcaaatacaatcacaacttcaacgccagcaaac 13512
Query: 252 ccttctttctacgttaacacacatcggggagttttcaaaacggttctttcaagttctatg 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13511 ccttctttctacgttaacacacatcggggagttttcaaaacggttctttcaagttctatg 13452
Query: 312 tgataactgggatatgtcattaaagaatcctagcagagaccagctacaggttttagtctc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13451 tgataactgggatatgtcattaaagaatcctagcagagaccagctacaggttttagtctc 13392
Query: 372 aattttcaggcttctataccctttagttttctatgaaacgttgacagaaaagaacgcatc 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13391 aattttcaggcttctataccctttagttttctatgaaacgttgacagaaaagaacgcatc 13332
Query: 432 attgaaatccttcttcaagaaggcagttaaatcttctatcacgatacaggatatcttctt 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13331 attgaaatccttcttcaagaaggcagttaaatcttctatcacgatacaggatatcttctt 13272
Query: 492 gacagtggcatcgttcatgatcttatgccacatattcattacattagagaaagaatacgc 551
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 13271 gacagtggcatcgctcatgatcttatgccacaaattcattacattagagaaagaaaacgc 13212
Query: 552 aaaataagaatt-actggtagcattattgacttaatatcagctttacatatgccttgctg 610
|||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13211 aaaagaagaattcactggtagcattattgacttaatatcagctttacatatg-cttgctg 13153
Query: 611 gcaagtttgagttttgtgatagatttgaggggaacctcttaaaagttcaataaaagcttc 670
|||||||||||||||||||||||||||| || ||| |||||||||| ||| |||||||
Sbjct: 13152 gcaagtttgagttttgtgatagatttgatggaaacttcttaaaagtacaagaaaagctct 13093
Query: 671 tatgcgaatttttcaacgatcctgctttt 699
|||||||||||| ||||||| ||||||||
Sbjct: 13092 tatgcgaattttccaacgattctgctttt 13064
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7641
Number of Sequences: 1807
Number of extensions: 7641
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 877
length of database: 10,358,551
effective HSP length: 16
effective length of query: 861
effective length of database: 10,329,639
effective search space: 8893819179
effective search space used: 8893819179
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)