BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig438 1235 0.0
3x_Contig1315 224 2e-58
>3x_Contig438
Length = 1434
Score = 1235 bits (623), Expect = 0.0
Identities = 652/659 (98%), Gaps = 2/659 (0%)
Strand = Plus / Plus
Query: 270 aatttcaaagattctgaattaacgagatcgacattagcaggggagatggccaagatgata 329
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aattccaaagattctgaat-aacgagatcgacattagcaggggagatggccaagatgata 59
Query: 330 cagtttggcttggcaacatattccaagatcaaattctcgatttgtctttcaatatccggt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 cagtttggcttggcaacatattccaagatcaaattctcgatttgtctttcaatatccggt 119
Query: 390 ggctgttccccaatcggaaccttagtgatacctggtagatccactaaagtcaagttcaaa 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggctgttccccaatcggaaccttagtgatacctggtagatccactaaagtcaagttcaaa 179
Query: 450 acatgcggagaatatattttcaagttgattggaattctgcttattcccttctctttccct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 acatgcggagaatatattttcaagttgattggaattctgcttattcccttctctttccct 239
Query: 510 gcaatcctagcagtttcgttttcaatttcccttctaatttcagaaaagtcgtagaatcta 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcaatcctagcagtttcgttttcaatttcccttctaatttcagaaaagtcgtagaatcta 299
Query: 570 cgacctggaatatgtaaaaactcaccccattcattctttatttcaggcttatagtttgaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cgacctggaatatgtaaaaactcaccccattcattctttatttcaggcttatagtttgaa 359
Query: 630 ttctttctcaaatgatcttccaaggtcatttccttctccgtgcgggcatctggctcgtca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctttctcaaatgatcttccaaggtcatttccttctccgtgcgggcatctggctcgtca 419
Query: 690 ttaacctgttcaagtgacgtagatgaagaattgtcataattataaaccaatggagaattc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttaacctgttcaagtgacgtagatgaagaattgtcataattataaaccaatggagaattc 479
Query: 750 ggatcaatattattcaactgaagaactagaggacgtctggtaacaataccagtaccacga 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggatcaatattattcaactgaagaactagaggacgtctggtaacaataccagtaccacga 539
Query: 810 ggttaagaaatctctcccgaccaacgtttccaagatcgaatacttaccagtagattgcga 869
|| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 540 gg-taagaaatctctcccgaccaacgtttccaagatcgaagacttaccagaagattgcga 598
Query: 870 tccaataacagctaaaaccggtagatcccaactgttaatgcctgcatcgtacataacat 928
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 599 tccaataacagctaaaaccggtagatccaaactgtcaatgcctgcatcgtacataacat 657
>3x_Contig1315
Length = 8846
Score = 224 bits (113), Expect = 2e-58
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 88 cttcaacacttttgttttgttggatgtcttgctgggatctgttcaccacaccgacaaatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cttcaacacttttgttttgttggatgtcttgctgggatctgttcaccacaccgacaaatc 63
Query: 148 ctagcttcaaaggatacaacttccctgacaaaatatccaaagcattagtgcct 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctagcttcaaaggatacaacttccctgacaaaatatccaaagcattagtgcct 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7216
Number of Sequences: 1807
Number of extensions: 7216
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)