BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA02RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig532 1435 0.0
>3x_Contig532
Length = 2251
Score = 1435 bits (724), Expect = 0.0
Identities = 774/787 (98%), Gaps = 3/787 (0%)
Strand = Plus / Plus
Query: 120 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 accaatcaagaagcttgagtttctcctatatcagatatggcagcagcaggaagaggcagg 73
Query: 180 aagagctcgagggtttctcgctcattttttta-gcaaccagctataaaatcgatacagac 238
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 74 aagagctcgagggtttctcgctcagctaacaaagcaaccagctataaaatcgatacagac 133
Query: 239 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gagttagacattgaagatgatgaaaaggatcaagagtaccctggaccagccaatgatgat 193
Query: 299 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gattacgatgatgacccagatgctgatatcgaaaacgagggtaaaccatctcgttccaag 253
Query: 359 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgcaaggccgcttcgagcacacctgttccagtggtactagcgacaagaggaaggccttca 313
Query: 419 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aagaggaaaagagaagaagatttgaacgatcccttaagacagaaactaccgtacccagtg 373
Query: 479 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gacgaaaacgggtctccatacccaattgtgaatgacgagtattcattacctgaggatcca 433
Query: 539 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gagggtgaaaccaagatcaccaagaatggtgatcttctagagggaagacaatttgtagtc 493
Query: 599 agaactttcacggtaccttccagaggtgaagttaaatacatgctttctactgagccagcc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agaactttcacggtaccttccagaggtgaagttaaatacatgctttctactgagccagcc 553
Query: 659 cgtgccgttgggttcagagactcatacttgttcttccagtaccatccaaacctatacaaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 cgtgccgttgggttcagagactcatacttgttcttccagtaccatccaaacctatacaaa 613
Query: 719 ttgattatctcgcaatcagagagagacgatctcatcaaaaatggtgtattgccctattcg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttgattatctcgcaatcagagagagacgatctcatcaaaaatggtgtattgccctattcg 673
Query: 779 tacagaaacagaatcattgcgctagttactgcaaggagtgtgttccgagaatttcgagcc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 674 tacagaaacagaatcattgcgctagttactgcaaggagtgtgttccgagaattcggagcc 733
Query: 839 aaggttg-tgtagatggtaaaaacatcacggatgattattacgcccgtnnagcttcgtgc 897
||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 734 aaggttgttgtagatggtaaaaacatcacggatgattattacgccggt-aagcttcgtgc 792
Query: 898 atccggg 904
|||||||
Sbjct: 793 atccggg 799
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6603
Number of Sequences: 1807
Number of extensions: 6603
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)