BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1248 1635 0.0
>3x_Contig1248
Length = 5957
Score = 1635 bits (825), Expect = 0.0
Identities = 858/865 (99%), Gaps = 3/865 (0%)
Strand = Plus / Plus
Query: 48 taaaatcatatctaagtgccagcctagttaaaagatgtgtacataaaaagaagataaaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4199 taaaatcatatctaagtgccagcctagttaaaagatgtgtacataaaaagaagataaaag 4258
Query: 108 attggtttagcgagtgacagccgttcatactgtactactccgtgtttgtaacctttgaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4259 attggtttagcgagtgacagccgttcatactgtactactccgtgtttgtaacctttgaaa 4318
Query: 168 tacttatttataaatgaactgcgtaatggatacaatctaacctaatacgattctctataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4319 tacttatttataaatgaactgcgtaatggatacaatctaacctaatacgattcgctataa 4378
Query: 228 agtattgtatgggtgtatgggtgtatgggtgctttcgttgtttcaacatcagtttttcga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4379 agtattgtatgggtgtatgggtgtatgggtgctttcgttgtttcaacatcagtttttcga 4438
Query: 288 attattcaatcaacctaaacaaagcattcactagcttttggtacattaacttacatgcat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4439 attattcaatcaacctaaacaaagcattcactagcttttggtacattaacttacatgcat 4498
Query: 348 caacttgtatagatgagacatatcatctgcttacctcctagtagaataaactaagctacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4499 caacttgtatagatgagacatatcatctgcttacctcctagtagaataaactaagctacc 4558
Query: 408 gctagattgagattaaagaaaaatcaaaatcaaatgtctgcggcacagagtggagcaacg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4559 gctagattgagattaaagaaaaatcaaaatcaaatgtctgcggcacagagtggagcaacg 4618
Query: 468 gttgaacatcaacaggcacaaactgtgccagttgcacaaccaactgacatgtatatccaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4619 gttgaacatcaacaggcacaaactgtgccagttgcacaaccaactgacatgtatatccaa 4678
Query: 528 ccgtatttgaagaaattaataccagaattggatgggctaagtaagttacaagaggctgag 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4679 ccgtatttgaagaaattaataccagaattggatgggctaagtaagttacaagaggctgag 4738
Query: 588 aagagaattgacatatatttaagtcgtaaaaaaattgatttgcatcagaatattactcaa 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4739 aagagaattgacatatatttaagtcgtaaaaaaattgatttgcatcagaatattactcaa 4798
Query: 648 tggactcattccaaatacacagatcctgcgaataatcagtttgttcgtgttttcatttct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4799 tggactcattccaaatacacagatcctgcgaataatcagtttgttcgtgttttcatttct 4858
Query: 708 aatatttctgagaaccagccatggcagacgaacgatgagaccatggaacttgatcaagca 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4859 aatatttctgagaaccagccatggcagacgaacgatgagaccatggaacttgatcaagca 4918
Query: 768 tcatggacattgcgtattgaaggtagactgttagataatgggaaggcagacgatcc-aat 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4919 tcatggacattgcgtattgaaggtagactgttagataatgggaaggcagacgatccaaat 4978
Query: 827 aggccttaattttcctcctttatagaaagcgtcgcgattagatttc-aacctgttgagga 885
|||||| |||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct: 4979 aggcctaaattttcctcctttatagaaagcgtcgcga-tagatttcaaacctgtagagga 5037
Query: 886 agatcaagatgatgaaactgttcaa 910
|||||||||||||||||||| ||||
Sbjct: 5038 agatcaagatgatgaaactgatcaa 5062
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7028
Number of Sequences: 1807
Number of extensions: 7028
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)