BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA05FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1062 1576 0.0
>3x_Contig1062
Length = 5564
Score = 1576 bits (795), Expect = 0.0
Identities = 826/835 (98%), Gaps = 1/835 (0%)
Strand = Plus / Plus
Query: 86 caccagatttacaaccactgaactttgtgaaagtttcttcaccgattatgatttcctcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4050 caccagatttacaaccactgaactttgtgaaagtttcttcaccgattatgatttcctcga 4109
Query: 146 tgagcttacattcaccaagtttacatttttctggattgtcaaatgtcgaaacaacttcac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4110 tgagcttacattcaccaagtttacatttttctggattgtcaaatgtcgaaacaacttcac 4169
Query: 206 caccagtcacaagtgctagtcgttccacaccttcaaaatcagcatgttcaatggagttaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 caccagtcacaagtgctagtcgttccacaccttcaaaatcagcatgttcaatggagttaa 4229
Query: 266 ttcctagatctgtaaacatttgttcagggtagtcgtatatcaactgtctgttgatgaacg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4230 ttcctagatctgtaaacatttgttcagggtagtcgtatatcaactgtctgttgatgaacg 4289
Query: 326 tgttgatgttgaaattagcaatcttttcaatcttctttttcattttttcacgttcagctt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290 tgttgatgttgaaattagcaatcttttcaatcttctttttcattttttcacgttcagctt 4349
Query: 386 tctctaattctgcaagcttagacgtagaatcaaccttgaacttggtaccaaagatcttga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4350 tctctaattctgcaagcttagacgtagaatcaaccttgaacttggtaccaaagatcttga 4409
Query: 446 ccttgtcagtatctagagaagtgttggcaatcaaaattttagcattttccacgcgctttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 ccttgtcagtatctagagaagtgttggcaatcaaaattttagcattttccacgcgctttg 4469
Query: 506 gctggttgctaccaaatctttttggtaagataaatccttcatctaagaaagaatcagaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 gctggttgctaccaaatctttttggtaagataaatccttcatctaagaaagaatcagaaa 4529
Query: 566 gcttaccaccaatgatcttgataatttgaatatgttccaaattggtggaacccttcaatc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 gcttaccaccaatgatcttgataatttgaatatgttccaaattggtggaacccttcaatc 4589
Query: 626 tgagaatggcatctgttgccaattttgagaaatgatctttatcttgagacaaaattttag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 tgagaatggcatctgttgccaattttgagaaatgatctttatcttgagacaaaattttag 4649
Query: 686 atgaaagtgtcgtgtttgcaatgctgatcaaatcgttgtagaactcttccttattattcg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 atgaaagtgtcgtgtttgcaatgctgatcaaatcgttgtagaactcttccttattattcg 4709
Query: 746 agttatccacagcggccttttccaatgctgatagagcagccgcagatgcaattcttaaac 805
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4710 agttatccacagcggccttctccaatgctgatagagcagccgcagatgcaattctgaaac 4769
Query: 806 cttcaatattggtttgtgggtggattttttccttgttcgaccaatttcttagcctctttc 865
|||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 4770 cttcaataatggtttgtgggtgga-tttttccttgttcgaccaatttctcagcctctctc 4828
Query: 866 aatagctcagcacttaaaactgttacactgggagtaccgtcaccaactttatcat 920
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct: 4829 aatagctcagcacttaaaactgtaacactggtagtaccgtcaccaacttcatcat 4883
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8176
Number of Sequences: 1807
Number of extensions: 8176
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)