BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA05RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1685 0.0
>3x_Contig1669
Length = 15503
Score = 1685 bits (850), Expect = 0.0
Identities = 878/885 (99%), Gaps = 2/885 (0%)
Strand = Plus / Plus
Query: 44 gcttgagcacctttttcgaaaacgctaacttcgtctgggttagattcttgcaatctaccc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2249 gcttgagcacctttttcgaaaacgctaacttcgtctgggttagattcttgcaatctaccc 2308
Query: 104 ttgatttccttcatgtaacccttgatgtaagtcaagaaagatttcttgtcgaaagcagtt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2309 ttgatttccttcatgtaacccttgatgtaagtcaagaaagatttcttgtcgaaagcagtt 2368
Query: 164 tgttgcaaacggaaagagtgaacaacattgttgaccaattcagtaccatcttctatcttc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 2369 tgttgcaaacggaaagagtgaacaacattgttgaccaattcagtaccatcttcga-cgtc 2427
Query: 224 gtcaccaccgtcttcagcagatgggttggcaccgatatcgatgttgtcaccaccaacctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 gtcaccaccgtcttcagcagatgggttggcaccgatatcgatgttgtcaccaccaacctt 2487
Query: 284 gaccatgtcacagtcagcttcgtaaatgacaccgtcaaccaacttcaagtcgtaggcatc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 gaccatgtcacagtcagcttcgtaaatgacaccgtcaaccaacttcaagtcgtaggcatc 2547
Query: 344 ggacaatagttcgtcaccagagataatatcagtgtaaatgatcatgttgctattgtatca 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 ggacaatagttcgtcaccagagataatatcagtgtaaatgatcatgttgctattgtatca 2607
Query: 404 gggatcgattgatgttctcttcacgggatgtaagataaagctaaactaaactaaaactaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gggatcgattgatgttctcttcacgggatgtaagataaagctaaactaaactaaaactaa 2667
Query: 464 attaaatcaactatccaaaaagattacaaaacaatcattacaaagaataaatattcaaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2668 attaaatcaactatccaaaaagattacaaaacaatcattacaaagaataaatattcaaag 2727
Query: 524 gaaataaataacatcatgcactaaaatgtaatttaaaaccaagaagaaatacctctaaac 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2728 gaaataaataacatcatgcactaaaatgtaatttaaaaccaagaagaaatacctctaaac 2787
Query: 584 aatgaaaagaattaattttatcttgatatccaatgttcatcatgtgcatcgaatttccat 643
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2788 aatgaaaagaattaattntatcttgatatccaatgttcatcatgtgcatcgaatttccat 2847
Query: 644 cctttatataaaccttcctttgaacaggaaaaccttgaacaaaaagaaaaaaaaattttt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2848 cctttatataaaccttcctttgaacaggaaaaccttgaacaaaaagaaaaaaaaattttt 2907
Query: 704 cacttcgcttctgtaaaagaaaaaatcacggcgatgagctgtagaagtgggaaaaagcaa 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2908 cacttcgcttctgtaaaagaaaaaatcacggcgatgagctgtagaagtgggaaaaagcaa 2967
Query: 764 ttatccgtacaccacacaataaattcaagcatcacgtgaattggctaactgcatgcattt 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2968 ttatccgtacaccacacaataaattcaagcatcacgtgaattggctaactgcatgcattt 3027
Query: 824 cccttt-tataggctcgtaaactgctacactcgcatttatattcagtttatgcttagttt 882
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3028 ccctttatataggctcgtaaactgctacactcgcatttatattcagtttatgctaggttt 3087
Query: 883 ttaagccccatcgcagctattatcccgtttacagacgtcaattca 927
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3088 ttaagccccatcgcagctattatcccgtttacagacgtcaattca 3132
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9845
Number of Sequences: 1807
Number of extensions: 9845
Number of successful extensions: 138
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)