BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA10FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig213 1039 0.0
>3x_Contig213
Length = 1583
Score = 1039 bits (524), Expect = 0.0
Identities = 560/568 (98%), Gaps = 3/568 (0%)
Strand = Plus / Plus
Query: 71 tgtatgtagattctttggaaaggtccttggtttgtatttgggaaataggatcatttaatg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tgtatgtagattctttggaaaggtccttggtttgtatttgggaaataggatcatttaatg 767
Query: 131 cagttcccgttattggagtttcgtcattttcttctagttccataattcgatgaaatattt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cagttcccgttattggagtttcgtcattttcttctagttccataattcgatgaaatattt 827
Query: 191 ggtgtattaattttccccttgagtctatttattcaaaatacagaccagccaatgtatata 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 ggtgtattaattttccccttgagtctatttattcaaaatacagaccagccaatgtatata 887
Query: 251 ttgaccaagtactaattaaaatcccttcatcagtaattttgtagcttgcatcattatgtt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 ttgaccaagtactaattaaaatcccttcatcagtaattttgtagcttgcatcattatgtt 947
Query: 311 ttcccataaaacaacaattttctgaaggaattcctgtttagtttccaaaaatatgataag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ttcccataaaacaacaattttctgaaggaattcctgtttagtttccaaaaatatgataag 1007
Query: 371 gaatttacaaaaaaatcacttaatccgtccagagacaggaaaagaaaaagtgagaaagcc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 gaatttacaaaaaaatcacttaatccgtccagagacaggaaaagaaaaagtgagaaagcc 1067
Query: 431 tgtcagttatacttggaatagactttaaaacattaatatacagaagaaaataaagactaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 tgtcagttatacttggaatagactttaaaacattaatatacagaagaaaataaagactaa 1127
Query: 491 cgttataaatgatgaagtattagttgaaatgatgggataaaccggttttaacatcctaaa 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 cgttataaatgatgaagtattagttgaaatgatgggataaaccggttttaacatcctaaa 1187
Query: 551 aaaatatggcacttttttagaatattattttctttggtggattttaccggcacatattgg 610
|||| | ||||| || ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct: 1188 aaaaaaaggcac-ttcttagaatatca-tttctttggtggattttaccggcacata-tgg 1244
Query: 611 ttttgttgtatcaattgagagaggacac 638
|||||||||||||||||||| |||||||
Sbjct: 1245 ttttgttgtatcaattgagaaaggacac 1272
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9016
Number of Sequences: 1807
Number of extensions: 9016
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)