BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1544 0.0
>3x_Contig1709
Length = 16948
Score = 1544 bits (779), Expect = 0.0
Identities = 815/826 (98%), Gaps = 1/826 (0%)
Strand = Plus / Plus
Query: 47 taagaggtttgggtggtatcttattgaaccctgacacaggtttgaggtttaccaatgaac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8827 taagaggtttgggtggtatcttattgaaccctgacacaggtttgaggtttaccaatgaac 8886
Query: 107 taaacactcgtgacactgttactgcagctattcaatccaaatgcaaatcacaaactgcct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8887 taaacactcgtgacactgttactgcagctattcaatccaaatgcaaatcacaaactgcct 8946
Query: 167 ggatggtcatgagtgaggatctatatggaaattataagccaaatcttgacttctacatgt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8947 ggatggtcatgagtgaggatctatatggaaattataagccaaatcttgacttctacatgt 9006
Query: 227 tcaagaaattagtaacaaaaacaactgttgcagattttgccaaagatttgccaattgatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9007 tcaagaaattagtaacaaaaacaactgttgcagattttgccaaagatttgccaattgatg 9066
Query: 287 ccaataccttgatctctgaattggtcacttattcggacatttcaaaggaagaccaatttg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9067 ccaataccttgatctctgaattggtcacttattcggacatttcaaaggaagaccaatttg 9126
Query: 347 gtcgtactcatagggaaaatcaatttgcatccactctttcggaggattctaccattttcg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9127 gtcgtactcatagggaaaatcaatttgcatccactctttcggaggattctaccattttcg 9186
Query: 407 tgggcaaaatcactccagtagttcatttcaccatgggtggtgcaaagattgacgaacagt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9187 tgggcaaaatcactccagtagttcatttcaccatgggtggtgcaaagattgacgaacagt 9246
Query: 467 ctcgtgtgctaaatgctgaaggtaatccgattgctactggaatttacgccgccggtgaag 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9247 ctcgtgtgctaaatgctgaaggtaatccgattgctactggaatttacgccgccggtgaag 9306
Query: 527 tttccggtggcgttcacggtgccaacagattaggtggttcctccttgttagaatgtgtcg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9307 tttccggtggcgttcacggtgccaacagattaggtggttcctccttgttagaatgtgtcg 9366
Query: 587 tatttggcagacaggctgctagatcaattaaggctagtttgtgaatgtttggcgactgca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9367 tatttggcagacaggctgctagatcaattaaggctagtttgtgaatgtttggcgactgca 9426
Query: 647 gaaaatgagtctcgcaatgaaggagatcttcaacaactacccgtggtttatagataacca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9427 gaaaatgagtctcgcaatgaaggagatcttcaacaactacccgtggtttatagataacca 9486
Query: 707 gaacttactatgatacgttgtatatcttcctctgtatcaaatatatgtatgtatgtatgt 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9487 gaacttactatgatacgttgtatatcttcctctgtatcaaatatatgtatgtatgtatgt 9546
Query: 767 gcatgtatgaattttaatgaaatgggctaagaactgaacgatgaaagatctganaa-gaa 825
||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct: 9547 gcatgtatgaattttaatgaaatggctaaagaactgaacgatgaaagatctgaaaatgaa 9606
Query: 826 atttaataatgctagcttcactttacagaaagtacctaggacaaaa 871
| |||||||||||||||||||| |||||||| |||||||||||
Sbjct: 9607 gtataataatgctagcttcacttcacagaaagatactaggacaaaa 9652
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6015
Number of Sequences: 1807
Number of extensions: 6015
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)