BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1667 0.0
>3x_Contig1744
Length = 24119
Score = 1667 bits (841), Expect = 0.0
Identities = 870/877 (99%), Gaps = 2/877 (0%)
Strand = Plus / Plus
Query: 48 tgttgaaggaagacgcttaaacctatccaccaggttgttaatttttctgaaaagtaaata 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13077 tgttgaaggaagacgcttaaacctatccaccaggttgttaatttttctgaaaagtaaata 13136
Query: 108 tctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcacataag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13137 tctcatttatcaatatctctttgtgtcttaagttgttaattcgcacatcgtgcacataag 13196
Query: 168 cacacccatgactatcactttatttagtactcttttttaccaatattattacatctagtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13197 cacacccatgactatcactttatttagtactcttttttaccaatattattacatctagtt 13256
Query: 228 ttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagagggagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13257 ttagttttccaaaccgattaatattaatttgggtcttaattgaaagatgaaagagggagt 13316
Query: 288 caagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactgaatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13317 caagcaacatatgtgattgattgatttgtatggttcttcatgatgctgttgtactgaatt 13376
Query: 348 gcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaactaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13377 gcaacatataaactcaactatctttatatcttcatgtactttaatatttcactgaactaa 13436
Query: 408 attgaaataattcataattaaccggtatattttcttgcttacttgaattatttacacgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13437 attgaaataattcataattaaccggtatattttcttgcttacttgaattatttacacgat 13496
Query: 468 tcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgtagtt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13497 tcatactgttcgtttaaataagccactccatccagcggagtgggttttaattatgtagtt 13556
Query: 528 tccttgctttgtgttataacccagctatcgaatatacgcctgtctgttgatattttatca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13557 tccttgctttgtgttataacccagctatcgaatatacgcctgtctgttgatattttatca 13616
Query: 588 ccgcatcgtgatacaatggcaaataatgaggtgaagtgatatcaaagtgacttttcgcta 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13617 ccgcatcgtgatacaatggcaaataatgaggtgaagtgatatcaaagtgacttttcgcta 13676
Query: 648 ttggaggaaacaaaacatgtcttacatttgtgtatgcataacttgcgtaatctgtgtctt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13677 ttggaggaaacaaaacatgtcttacatttgtgtatgcataacttgcgtaatctgtgtctt 13736
Query: 708 tatacttgttatcacgaacgattatatccttctccgaaacatcaacccattctgtttgta 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13737 tatacttgttatcacgaacgattatatccttctccgaaacatcaacccattctgtttgta 13796
Query: 768 ctgaattcataactgtgaatctctagaaatttaggttgggcgtcgcaccagtaaatatca 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13797 ctgaattcataactgtgaatctctagaaatttaggttgggcgtcgcaccagtaaatatca 13856
Query: 828 tagcccagctaaatataaatncctgtgtgttgagcttgagataagagatgaagagctttt 887
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 13857 tagcccagctaaatataaat-cctgtgtgttgagcttgagataggagatgaagagctttt 13915
Query: 888 cttctttctatccttgagcattcttggatcatcatcg 924
|||| ||||||||| ||||||||| ||||||||||
Sbjct: 13916 cttc-ttctatcctgaggcattcttgaatcatcatcg 13951
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7418
Number of Sequences: 1807
Number of extensions: 7418
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)