BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZA12FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1548 0.0
>3x_Contig1802
Length = 45229
Score = 1548 bits (781), Expect = 0.0
Identities = 816/824 (99%), Gaps = 3/824 (0%)
Strand = Plus / Minus
Query: 89 tccctttctcctaccaaatggatttttcattaagatatatgaccgaaaaaaacacctctt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28709 tccctttctcctaccaaatggatttttcattaagatatatgaccgaaaaaaacacctctt 28650
Query: 149 tacataataaacatcttctgaaacaaattaatgtggctacatagagtccagttaaaataa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28649 tacataataaacatcttctgaaacaaattaatgtggctacatagagtccagttaaaataa 28590
Query: 209 aataatagccgtgtgtcagacattattattttcttcatctgactttttttgaatattgtc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28589 aataatagccgtgtgtcagacattattattttcttcatctgactttttttgaatattgtc 28530
Query: 269 tgcttttactgattggttttgtttccatgttgccatatctgacttgaagccagcaactaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28529 tgcttttactgattggttttgtttccatgttgccatatctgacttgaagccagcaactaa 28470
Query: 329 gacatacgatagtgtcgcaattgctataactttgtaaaattcaaataactttcctccgct 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28469 gacatacgatagtgtcgcaattgctataactttgtaaaattcaaataactttcctccgct 28410
Query: 389 attggagcccttcatgccttggttgattggccataatgcagtaagaacatttgtctttag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28409 attggagcccttcatgccttggttgattggccataatgcagtaagaacatttgtctttag 28350
Query: 449 tctggtcagacaaataaaattcttgaacgaaaacttagagtttctttatatacaattttc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28349 tctggtcagacaaataaaattcttgaacgaaaacttagagtttctttatatacaattttc 28290
Query: 509 cgttatcattttgtttttcttgttataaagtcttttgttaagatttaccagttacaagcg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28289 cgttatcattttgtttttcttgttataaagtcttttgttaagatttaccagttacaagcg 28230
Query: 569 gatctctagttaatttgtaccattatgatttttcggtaaacttgcagttcagaaacatat 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28229 gatctctagttaatttgtaccattatgatttttcggtaaacttgcagttcagaaacatat 28170
Query: 629 gtgcaacagatgcatgagcgaagaaacgcagaacagttcgtagtggaaaacatcgcactc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28169 gtgcaacagatgcatgagcgaagaaacgcagaacagttcgtagtggaaaacatcgcactc 28110
Query: 689 tatcacttacaataacaatgcttcgagacaaaggaaagttaataaatgtcattaggcgtg 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28109 tatcacttacaataacaatgcttcgagacaaaggaaagttaataaatgtcattaggcgtg 28050
Query: 749 ccagaatgcanaacgaggcacactaactttatactttgacatacgtgttgcacgatttcg 808
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28049 ccagaatgcaaaacgaggcacactaactttatactttgacatacgtgttgcacgatttcg 27990
Query: 809 tttgagtttctttgacatatacaatttccctttttttagggacttttcgttttctctcag 868
|||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 27989 tttgagtttcttgaacatatacattttccttttttttagggacttttcg-tttctctcag 27931
Query: 869 catcgtttgtattgtgcgctcaattactatccttgtgacctgaa 912
|||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 27930 catcgtttgtattg-gcgctcaattactatcctt-tgacctgaa 27889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7500
Number of Sequences: 1807
Number of extensions: 7500
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)