BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC11ZA12RM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig960 149 1e-35 >3x_Contig960 Length = 2402 Score = 149 bits (75), Expect = 1e-35 Identities = 114/123 (92%), Gaps = 3/123 (2%) Strand = Plus / Plus Query: 820 ctaatatggaatgaggatgaaattagcataacggactggaaaagcggaacaactaccagc 879 ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 10 ctaatatggaatgagaaggaa-ttagcataacggactggaaaagcggaacaactaccagc 68 Query: 880 ttaaacatacccgtagggatttg-aaaagctgcatgatattatagagataaatgggggac 938 |||||||||| | | ||||||| ||||||||||||||||||||||||||||||||| || Sbjct: 69 ataaacataccag-aaggatttgaaaaagctgcatgatattatagagataaatggggaac 127 Query: 939 atg 941 ||| Sbjct: 128 atg 130 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7422 Number of Sequences: 1807 Number of extensions: 7422 Number of successful extensions: 39 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)