BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB02FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig508 1554 0.0
>3x_Contig508
Length = 2437
Score = 1554 bits (784), Expect = 0.0
Identities = 828/836 (99%), Gaps = 5/836 (0%)
Strand = Plus / Minus
Query: 88 acgcaaagaatgtgagtgcaaccgtttcgtataaaaacaacttcgatgcgttggctactc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 acgcaaagaatgtgagtgcaaccgtttcgtataaaaacaacttcgatgcgttggctactc 2162
Query: 148 tcctaagcaattacgaaaatttgatcaacgatacacatatgatttttattccaggtccaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 tcctaagcaattacgaaaatttgatcaacgatacacatatgatttttattccaggtccaa 2102
Query: 208 atgatccgtgttacatcaatggttggactaggtactactactatgtggccccaaaaaata 267
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atgatccgtgg-acatcaatggttggactaggtactactactatgtggccccaaaaaata 2043
Query: 268 attccatcatcatttactcaaaaaatgagtagaatttgtagaaaagtgcattggggctct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2042 attccatcatcatttactcaaaaaatgagtagaatttgtagaaaagtgcattggggctct 1983
Query: 328 aacccattaagaattgcatatctatcacaagagattgttctgacacgcgatgatttagca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1982 aacccattaagaattgcatatctatcacaagagattgttctgacacgcgatgatttagca 1923
Query: 388 aatagatttaaaagatacaatattgttttccctactgtggaagaggagaaatatctggaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1922 aatagatttaaaagatacaatattgttttccctactgtggaagaggagaaatatctggaa 1863
Query: 448 aatgcagaacttcaagagcaatattcaagaaacccggatgtttcagtaggccagttaatc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1862 aatgcagaacttcaagagcaatattcaagaaacccggatgtttcagtaggccagttaatc 1803
Query: 508 gcattcaagaataatttgcctgtaagtgttttagaatcgaggaaattggtgaaaacattg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1802 gcattcaagaataatttgcctgtaagtgttttagaatcgaggaaattggtgaaaacattg 1743
Query: 568 ctcgatcaacaacatctatctccgttttcatcaagaattcgaccaactgtttgggatctt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1742 ctcgatcaacaacatctatctccgttttcatcaagaattcgaccaactgtttgggatctt 1683
Query: 628 gatttcacattgcagctatcaccgcttccatcgagtatcatgctgtgtgacactagcgca 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1682 gatttcacattgcagctatcaccgcttccatcgagtatcatgctgtgtgacactagcgca 1623
Query: 688 ccagctttcgatgtaacgtacaacggatgcaaaacgatcaaccccggtagatttattcac 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1622 ccagctttcgatgtaacgtacaacggatgcaaaacgatcaaccccggtagatttattcac 1563
Query: 748 aaaagagctgccaaatatatagaaattctttcctgcttctaaggttctagtagaggaaga 807
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 1562 aaaagagctgccaaatatatag-aattcttccctgcttctaaggttctagtagaggaaga 1504
Query: 808 gctaccattttaatttatcaatattaaactacttgtggtacctactttttgctgtcgtta 867
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 1503 gctaccattttaatttatcaatattaaactacttgtgg-acctactttttgcggtcgtta 1445
Query: 868 gcattcataattta-ttaagtttct-agacactaatctgagtacttgcgttggaaa 921
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1444 gcattcataatttatttaagtttctaagacactaatctgagtacttgcgttggaaa 1389
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6701
Number of Sequences: 1807
Number of extensions: 6701
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)