BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB02RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1788 1580 0.0
>3x_Contig1788
Length = 28493
Score = 1580 bits (797), Expect = 0.0
Identities = 861/876 (98%), Gaps = 5/876 (0%)
Strand = Plus / Minus
Query: 41 gcttccgctattgctcctgt-actcaacccccaaatagtacctagagtttgagttggtaa 99
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 18209 gcttccgctattgctcctgtcacacaacccccaaatagtacctagagtttgagttggtaa 18150
Query: 100 ctttgctttaaggaagatttctcttgctttattaccagctaggaaaccgctttcttccgt 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18149 ctttgctttaaggaagatttctcttgctttattaccagctaggaaaccgctttcttccgt 18090
Query: 160 tgatctgtcaaataattgggcaaacttggcataatcatgaggagtgcatacagtan-gac 218
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 18089 tgatctgtcaaataattgggcaaacttggcataatcatgaggagtgcatacaggaatgac 18030
Query: 219 ggaataagttggcgacgaacccgtattagttctgctcaccgatctattgataacagaggg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18029 ggaataagttggcgacgaacccgtattagttctgctcaccgatctattgataacagaggg 17970
Query: 279 gactctctggacagaatgagactgatttgatggtggtgggatagatggttgtgtagaagc 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17969 gactctctggacagaatgagactgatttgatggtggtgggatagatggttgtgtagaagc 17910
Query: 339 agagttgaacttttgactttgtccgaatgaagggagcttcgaagcaggagtctgatacaa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17909 agagttgaacttttgactttgtccgaatgaagggagcttcgaagcaggagtctgatacaa 17850
Query: 399 ttctaaagtaacttgcgcacctggattttcctgtaagtgcgcaaccattcttagagcggc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17849 ttctaaagtaacttgcgcacctggattttcctgtaagtgcgcaaccattcttagagcggc 17790
Query: 459 gttaaattgatcaacagttaagaagcccgcgttttcggtatcgcaaatggtccatatttg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17789 gttaaattgatcaacagttaagaagcccgcgttttcggtatcgcaaatggtccatatttg 17730
Query: 519 cgacaactgttgcggagttaaccctgattgactaaacaaaggtcttaaagcttctccagt 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17729 cgacaactgttgcggagttaaccctgattgactaaacaaaggtcttaaagcttctccagt 17670
Query: 579 cacaattcccaattgttctctatctaaccgagaaaagtgctgggaaaatgcttgcttttc 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17669 cacaattcccaattgttctctatctaaccgagaaaagtgctgggaaaatgcttgcttttc 17610
Query: 639 ctcactagtgaggggtacacggaacgcaatacctgacatggttcccagaggcgtggtgga 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17609 ctcactagtgaggggtacacggaacgcaatacctgacatggttcccagaggcgtggtgga 17550
Query: 699 tgtgtatctgttgcagtttatcggctatatttcacgaaagggtgttcgaccatttgatcc 758
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 17549 tgtgtatctgttgcagtttatcggctatatttcacgaaaggggtttcgaccatttgatcc 17490
Query: 759 aatttgtcgttattcaattatctcaaaaagatgatgaaactatttaatcgtgcaagatga 818
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 17489 aatttgtcgttattcaattatctcaaaaagatgatgaaactatataatcgtgcaagatga 17430
Query: 819 ctttcggatcgcataaagaagtgaagcattgatgtaggattaaagtttcccaagccgatg 878
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 17429 ctttcggatcgcataaagaagtgaagcattgatgtaggattaaggttt-ccaatgcgatg 17371
Query: 879 agagaagttgagtttatcacttctatttaaaaattg 914
|||| |||||||||||||||||| ||||| ||||||
Sbjct: 17370 agag-agttgagtttatcacttc-atttagaaattg 17337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5364
Number of Sequences: 1807
Number of extensions: 5364
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)