BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC11ZB04FM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1489 0.0
3x_Contig555 551 e-157
>3x_Contig1663
Length = 13533
Score = 1489 bits (751), Expect = 0.0
Identities = 799/810 (98%), Gaps = 4/810 (0%)
Strand = Plus / Plus
Query: 85 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 11928
Query: 145 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 11988
Query: 205 tacattggattctttttcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 264
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11989 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 12048
Query: 265 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12049 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 12108
Query: 325 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12109 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 12168
Query: 385 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 12228
Query: 445 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12229 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 12288
Query: 505 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12289 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 12348
Query: 565 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 12408
Query: 625 tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12409 tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 12468
Query: 685 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12469 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 12528
Query: 745 tacccgca-gtcaag-aaaatttggtggtctaagagatggttattatatcaatgctcaat 802
|| ||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 12529 ta-ccgcaggtcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaat 12587
Query: 803 gtggnatcattatgtttgatgtgacttccagaatcacctacaagaacgttccaaactggc 862
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12588 gtggtatcattatgtttgatgtgacttccagaatcacctacaagaacgttccaaactggc 12647
Query: 863 acagagaatttgtttcgtgtttgtgaaaac 892
|||||| ||||| |||||||||||||||||
Sbjct: 12648 acagag-atttggttcgtgtttgtgaaaac 12676
>3x_Contig555
Length = 1912
Score = 551 bits (278), Expect = e-157
Identities = 314/321 (97%), Gaps = 4/321 (1%)
Strand = Plus / Minus
Query: 574 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 1849
Query: 634 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1848 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 1789
Query: 694 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggatacccgca- 752
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1788 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggata-ccgcag 1730
Query: 753 gtcaag-aaaatttggtggtctaagagatggttattatatcaatgctcaatgtggnatca 811
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1729 gtcaagaaaaattcggtggtctaagagatggttattatatcaatgctcaatgtggtatca 1670
Query: 812 ttatgtttgatgtgacttccagaatcacctacaagaacgttccaaactggcacagagaat 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1669 ttatgtttgatgtgacttccagaatcacctacaagaacgttccaaactggcacagag-at 1611
Query: 872 ttgtttcgtgtttgtgaaaac 892
||| |||||||||||||||||
Sbjct: 1610 ttggttcgtgtttgtgaaaac 1590
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,751
Number of Sequences: 1807
Number of extensions: 15751
Number of successful extensions: 445
Number of sequences better than 1.0e-20: 2
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)