BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC11ZB05RM1.SCF screened BAC_end
         (924 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1635                                                        1693   0.0  
3x_Contig40                                                           174   2e-43

>3x_Contig1635 
          Length = 12349

 Score = 1693 bits (854), Expect = 0.0
 Identities = 871/877 (99%)
 Strand = Plus / Plus

                                                                        
Query: 47   gctttgatccatgaaggatattttgtggaaaaggtccatgaattaaccaaaattgactca 106
            ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 1760 gctttgatccatgaaggatattcggtggaaaaggtccatgaattaaccaaaattgactca 1819

                                                                        
Query: 107  tggttcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaat 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 tggttcctattcaagtgtatgaacatagtcgacatgtataaagatttggaacaggttaat 1879

                                                                        
Query: 167  gacctggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttttttgat 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1880 gacctggaatctttggacaaagaactgctacttgaagcgaagaaactaggtttctctgat 1939

                                                                        
Query: 227  gctcaaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagtt 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 gctcaaatcgcactatgtttgaacaagggtagtgactcaagaacctcagaattagaagtt 1999

                                                                        
Query: 287  agaagttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagcc 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2000 agaagttacagaaaatcctttggaatcgttccgtttgtcaaacgaattgacaccctagcc 2059

                                                                        
Query: 347  gcagaattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgat 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 gcagaattccctgctcaaacaaactatttatacactacttacaatgctactaagagtgat 2119

                                                                        
Query: 407  atcgaattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttca 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 atcgaattcactgataatggtgttctagtgctcggctcaggtgtctacagaataggttca 2179

                                                                        
Query: 467  agtgtggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaag 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 agtgtggaattcgattggtgtgctgttaacaccacaaaggccctcagaaaagaagggaag 2239

                                                                        
Query: 527  aaaactattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgac 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 aaaactattatgataaattacaatcctgaaacggtttccacagattttgatgaagttgac 2299

                                                                        
Query: 587  agattgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaat 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2300 agattgtatttcgaagaactctctttcgagcgtgtcatggatatttacgagttggagaat 2359

                                                                        
Query: 647  tctgaaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaactt 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2360 tctgaaggttgtgtcatctccgttggtggtcaacttccacagaacatcgctttgaaactt 2419

                                                                        
Query: 707  cttcacaatggtgctcacatattgngtacctctcctgaagacattgacaaggctgaaaac 766
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2420 cttcacaatggtgctcacatattgggtacctctcctgaagacattgacaaggctgaaaac 2479

                                                                        
Query: 767  agacacaagttctcaactattctggattctatcggcgtcaatcaaccagaatggagtgag 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2480 agacacaagttctcaactattctggattctatcggcgtcaatcaaccagaatggagtgag 2539

                                                                        
Query: 827  ttgtcttctgttgaagaagctaaagtattcgctaatcaagtgggatacccggttttaatt 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 ttgtcttctgttgaagaagctaaagtattcgctaatcaagtgggatacccggttttaatt 2599

                                                 
Query: 887  cgttcatcgtacgtgttgtctggtgctgctatgagtg 923
            ||| |||||||||||||||||||||||||||||||||
Sbjct: 2600 cgtccatcgtacgtgttgtctggtgctgctatgagtg 2636


>3x_Contig40 
          Length = 946

 Score =  174 bits (88), Expect = 2e-43
 Identities = 280/344 (81%)
 Strand = Plus / Minus

                                                                       
Query: 81  tccatgaattaaccaaaattgactcatggttcctattcaagtgtatgaacatagtcgaca 140
           ||||| |||||||||||||| ||||||  ||||||||||| | ||| |||||| || |||
Sbjct: 431 tccattaattaaccaaaatttactcatttttcctattcaattttattaacatattctaca 372

                                                                       
Query: 141 tgtataaagatttggaacaggttaatgacctggaatctttggacaaagaactgctacttg 200
           | |||||| ||||  ||||  ||||| ||||  |||||||  ||||| |||| |||||| 
Sbjct: 371 tttataaatatttttaacattttaattacctttaatctttttacaaataacttctacttt 312

                                                                       
Query: 201 aagcgaagaaactaggtttttttgatgctcaaatcgcactatgtttgaacaagggtagtg 260
           || | || ||||||  ||| | | || |||||||| |||||| ||| |||||   || | 
Sbjct: 311 aatctaataaactatttttctcttattctcaaatctcactattttttaacaattttattt 252

                                                                       
Query: 261 actcaagaacctcagaattagaagttagaagttacagaaaatcctttggaatcgttccgt 320
           |||||| ||||||| ||||| || ||| || ||||| ||||||||||  |||| |||| |
Sbjct: 251 actcaataacctcataattataatttataatttacataaaatcctttttaatctttcctt 192

                                                                       
Query: 321 ttgtcaaacgaattgacaccctagccgcagaattccctgctcaaacaaactatttataca 380
           || |||||| |||| |||||||| || || |||||||| |||||||||||||||||||||
Sbjct: 191 ttttcaaactaatttacaccctatcctcataattcccttctcaaacaaactatttataca 132

                                                       
Query: 381 ctacttacaatgctactaagagtgatatcgaattcactgataat 424
           ||||||||||| ||||||| | | ||||| |||||||| |||||
Sbjct: 131 ctacttacaattctactaatatttatatctaattcacttataat 88


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6577
Number of Sequences: 1807
Number of extensions: 6577
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)